Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_A24
(963 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006714-3|AAK29724.3| 82|Caenorhabditis elegans Hypothetical ... 42 5e-04
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 36 0.057
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 36 0.057
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 34 0.13
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 34 0.13
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 34 0.13
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 34 0.13
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 32 0.70
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 32 0.70
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 32 0.70
AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein. 31 0.92
AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical ... 31 0.92
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.2
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 31 1.2
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 31 1.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.6
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.6
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 31 1.6
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 31 1.6
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 31 1.6
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 31 1.6
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 31 1.6
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.6
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 31 1.6
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 31 1.6
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 31 1.6
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical pr... 30 2.1
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 30 2.8
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 2.8
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 3.7
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 29 4.9
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 4.9
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 4.9
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 29 4.9
AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen prot... 29 4.9
Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 29 6.5
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 29 6.5
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 29 6.5
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.6
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 28 8.6
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 28 8.6
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 28 8.6
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 8.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.6
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 28 8.6
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 8.6
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 28 8.6
AC024838-8|AAF60822.1| 234|Caenorhabditis elegans Thaumatin fam... 28 8.6
>AC006714-3|AAK29724.3| 82|Caenorhabditis elegans Hypothetical
protein Y119D3B.15 protein.
Length = 82
Score = 42.3 bits (95), Expect = 5e-04
Identities = 13/42 (30%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 232 PAENWGTE-DADDEDVSVWEDNWEDDVIQDDXNQXXRQQLEK 354
P + W + +++DV+VWEDNW+D+ + + ++ +++L K
Sbjct: 35 PVQEWAERAEGEEDDVNVWEDNWDDETHESEFSKQLKEELRK 76
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 35.5 bits (78), Expect = 0.057
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +3
Query: 696 GGXXRDX-RXGQPXGEXXXGXWGXPPXXGXPGP-XGPGXXGXGXREXXHXXGG 848
GG RD R G G G WG P G PG GPG G G + GG
Sbjct: 170 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGG 222
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 35.5 bits (78), Expect = 0.057
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +3
Query: 696 GGXXRDX-RXGQPXGEXXXGXWGXPPXXGXPGP-XGPGXXGXGXREXXHXXGG 848
GG RD R G G G WG P G PG GPG G G + GG
Sbjct: 208 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGG 260
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 34.3 bits (75), Expect = 0.13
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 811 PXXPGPXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAP 689
P PGP GP P G P P P G P + PP P
Sbjct: 188 PGLPGPPGPSGPQ--GAPGVPGEKGPTGEPGKVINGAPPGP 226
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = +3
Query: 696 GGXXRDX-RXGQPXGEXXXGXWGXPPXXGXPGP-XGPGXXGXGXREXXHXXG-GKXGXXX 866
GG RD R G G G WG P G PG GPG G G + G G+ G
Sbjct: 208 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGG 267
Query: 867 XXG 875
G
Sbjct: 268 QGG 270
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = +3
Query: 696 GGXXRDX-RXGQPXGEXXXGXWGXPPXXGXPGP-XGPGXXGXGXREXXHXXG-GKXGXXX 866
GG RD R G G G WG P G PG GPG G G + G G+ G
Sbjct: 170 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGG 229
Query: 867 XXG 875
G
Sbjct: 230 QGG 232
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = +3
Query: 696 GGXXRDX-RXGQPXGEXXXGXWGXPPXXGXPGP-XGPGXXGXGXREXXHXXG-GKXGXXX 866
GG RD R G G G WG P G PG GPG G G + G G+ G
Sbjct: 208 GGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGG 267
Query: 867 XXG 875
G
Sbjct: 268 QGG 270
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = -3
Query: 802 PGPXGPGXPXXG-GXPXFPXXLSPXGWPXRXSRXXPPAPXPXXXXPXSG 659
PGP G P G G P P P G P + PP P P G
Sbjct: 169 PGPPGHDGPNGGPGQPGQPGPHGPNGHPGKPGSQGPPGPPGHSDEPKPG 217
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/72 (31%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPG-PXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P PL PP P P PG P PG P G P P P G P + + P
Sbjct: 134 PQSPCEPLTPP---PCPACP-PGPPGAPGAPGKPGSEGPPGPPGHDGPNGGPGQPGQPGP 189
Query: 697 PAPXPXXXXPXS 662
P P S
Sbjct: 190 HGPNGHPGKPGS 201
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 826 SRXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAP 689
S P P PGP GP P G P P SP P PP P
Sbjct: 217 STYPEPAGPGPAGP--PGPAGPPG-PDGASPTAAPGAAGPPGPPGP 259
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = -3
Query: 826 SRXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAP 689
S P P PGP GP P G P P SP P PP P
Sbjct: 216 STYPEPAAPGPAGP--PGPAGPPG-PDGASPTAAPGAAGPPGPPGP 258
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +3
Query: 690 GAGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPG-PXGPGXXG 812
G GG G P G G G P G PG P GPG G
Sbjct: 108 GPGGLGTPGGPGTPGGPGNPGGLGGPGNPGGPGTPGGPGTPG 149
>AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein.
Length = 139
Score = 31.5 bits (68), Expect = 0.92
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 684 GXGAGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGP 791
G G GG R R G+ G G +G P G PGP
Sbjct: 85 GGGYGGYGRYGRYGRYGGYGGYGGYGGPGYGGGPGP 120
>AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical
protein F46E10.2 protein.
Length = 139
Score = 31.5 bits (68), Expect = 0.92
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 684 GXGAGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGP 791
G G GG R R G+ G G +G P G PGP
Sbjct: 85 GGGYGGYGRYGRYGRYGGYGGYGGYGGPGYGGGPGP 120
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -3
Query: 817 PXPXXPGPXGP-GXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAP 689
P P P P GP G P G P P P G P S P P
Sbjct: 159 PPPCQPCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGP 202
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = +3
Query: 684 GXGAGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXG-PGXXG 812
G G G P G+ G G P G PGP G PG G
Sbjct: 234 GPGPAGPPGPAGPAGPDGQSGSGSAGGPGPKGPPGPAGQPGSDG 277
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P PP + P P PGP G PG P G P P + G P P
Sbjct: 137 PTAPCEPTTPPPCKPCPQGP-PGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGP 195
Query: 697 P 695
P
Sbjct: 196 P 196
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P PP P P P P G PG P G P P G P +
Sbjct: 127 PGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGL 186
Query: 697 PAP 689
P P
Sbjct: 187 PGP 189
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P PP + P P PGP G PG P G P P + G P P
Sbjct: 137 PTAPCEPTTPPPCKPCPQGP-PGPPGPPGAPGDPGEAGTPGRPGTDATPGLPGPRGPPGP 195
Query: 697 P 695
P
Sbjct: 196 P 196
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P PP P P P P G PG P G P P G P +
Sbjct: 127 PGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGL 186
Query: 697 PAP 689
P P
Sbjct: 187 PGP 189
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P PP+ P P P P G PG P G P P G P +
Sbjct: 125 PGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGS 184
Query: 697 PAP 689
P P
Sbjct: 185 PGP 187
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P PP + P P PGP G PG P G P P + G P P
Sbjct: 135 PVAPCEPTTPPPCKPCPQGP-PGPPGPPGAPGDPGEAGTPGRPGTDAAPGSP---GPRGP 190
Query: 697 PAP 689
P P
Sbjct: 191 PGP 193
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P PP+ P P P P G PG P G P P G P +
Sbjct: 120 PGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGS 179
Query: 697 PAP 689
P P
Sbjct: 180 PGP 182
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P PP + P P PGP G PG P G P P + G P P
Sbjct: 130 PVAPCEPTTPPPCKPCPQGP-PGPPGPPGAPGDPGEAGTPGRPGTDAAPGSP---GPRGP 185
Query: 697 PAP 689
P P
Sbjct: 186 PGP 188
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = -3
Query: 856 PLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAP 689
PL P P PGP G PG G P P G P + PP P
Sbjct: 209 PLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGP 265
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/62 (30%), Positives = 21/62 (33%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPP 695
P P+ PP + P P PGP PG P G P P P PP
Sbjct: 133 PQQPCEPITPPPCKPCPQGP-PGPPGP--PGPPGDSGEPGSPGLPGQDAAPGEPGPKGPP 189
Query: 694 AP 689
P
Sbjct: 190 GP 191
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 823 RXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWP 722
R P P P P GP P G P FP + P G P
Sbjct: 147 REPPPCRPCPKGP--PGIKGWPGFPGDVGPPGPP 178
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 823 RXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWP 722
R P P P P GP P G P FP + P G P
Sbjct: 184 REPPPCRPCPKGP--PGIKGWPGFPGDVGPPGPP 215
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P+ PP W P PGP G PG G P P + G P P
Sbjct: 133 PQQPCEPITPP-PWKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPKGP 191
Query: 697 P 695
P
Sbjct: 192 P 192
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -3
Query: 823 RXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWP 722
R P P P P GP P G P FP + P G P
Sbjct: 168 REPPPCRPCPKGP--PGIKGWPGFPGDVGPPGPP 199
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P PP+ P P P P G PG P G P P G P +
Sbjct: 120 PGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGS 179
Query: 697 PAP 689
P P
Sbjct: 180 PGP 182
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P P PP + P P PGP G PG P G P P + G P P
Sbjct: 130 PVAPCEPTTPPPCKPCPQGP-PGPPGPPGAPGDPGEAGTPGRPGTDAAPGSP---GPRGP 185
Query: 697 PAP 689
P P
Sbjct: 186 PGP 188
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = -3
Query: 856 PLFPPLXWXXSRXPXPXXPGPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAP 689
PL P P PGP G PG G P P G P + PP P
Sbjct: 209 PLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGP 265
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = +3
Query: 669 GXXXXGXGAGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXGPGXXGXG 818
G G G GG D R P G G WG G G G G G G
Sbjct: 130 GGGGGGRGGGGRGGDGRG--PPGSNGGGDWGGNGGGGRGGGGGRGGGGGG 177
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXGP-GXPXXGGXPXFPXXLSPXGWPXRXSRXXP 698
P PL PP P P GP GP G G P P P G P P
Sbjct: 125 PKEPCEPLTPPPCKPCPEGP-PGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPGNKGPAGP 183
Query: 697 PAP 689
P P
Sbjct: 184 PGP 186
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/62 (30%), Positives = 21/62 (33%)
Frame = -3
Query: 874 PXXXXXPLFPPLXWXXSRXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPP 695
P P+ PP + P P PGP PG P G P P P PP
Sbjct: 133 PQQPCEPITPPPCKPCPQGP-PGPPGP--PGPPGDSGEPGSPGLPGQDAAPGEPGPKGPP 189
Query: 694 AP 689
P
Sbjct: 190 GP 191
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = +3
Query: 690 GAGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXG-PGXXGXGXRE 827
GA G GQP G G G P G PG G PG G E
Sbjct: 252 GAPGQPGQSGSGQPGGPGPQGDAGAPGAPGQPGQAGAPGQDGDSGSE 298
>Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.1 protein.
Length = 306
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 693 AGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXG-PGXXG 812
AG D R GQ G G G P G PG G PG G
Sbjct: 176 AGAPGNDGRPGQSGGAAIPGPPGPPGPSGQPGQDGHPGQDG 216
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -3
Query: 811 PXXPG-PXGPGXPXXGGXPXFPXXLSPXGWP 722
P PG P GPG P G P P P G P
Sbjct: 216 PGQPGEPGGPGEPGADGRPGHPGRAGPPGPP 246
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = -3
Query: 811 PXXPGPXGP-GXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAPXP 683
P PGP GP G P G P P G P + P P P
Sbjct: 210 PPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGP 253
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 723 GQPXGEXXXGXWGXPPXXGXPGPXGP 800
G P G G PP G PGP GP
Sbjct: 196 GAPGVPGPDGDAGSPPPPGPPGPPGP 221
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Frame = +3
Query: 624 AAXNKXTKNNRHPLXGXXXX--GXGAGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXG 797
A+ T++ RH G G G GG + +P G G P G PG G
Sbjct: 69 ASATNSTRSARHAGYGGYAQPQGGGGGGGGQCSTCCRPGPPGAGGTPGKPGRPGAPGAWG 128
Query: 798 -PGXXGXGXREXXH 836
PG G G H
Sbjct: 129 MPGNPGKGGSGPCH 142
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Frame = -3
Query: 817 PXPXXPG-PXGPGXPXXG-GXPXFPXXLSPX-GWPXRXS--RXXPPAPXPXXXXPXSG 659
P P P P GP P G P P + P G P R PPAP P P G
Sbjct: 122 PFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPG 179
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Frame = -3
Query: 817 PXPXXPG-PXGPGXPXXG-GXPXFPXXLSPX-GWPXRXS--RXXPPAPXPXXXXPXSG 659
P P P P GP P G P P + P G P R PPAP P P G
Sbjct: 122 PFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPG 179
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 811 PXXPGPXGP-GXPXXGGXPXFPXXLSPXGWPXRXSRXXPPA-PXP 683
P PGP GP G P G P + P G P R P P P
Sbjct: 255 PGPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQPGP 299
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +3
Query: 693 AGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXG-PGXXGXGXREXXHXXGGKXG 857
AG D G P G G G PGP G PG G R+ G+ G
Sbjct: 163 AGEPGHDGAPGAPGKPGAPGVGGGSGAPGAPGPKGAPGGPGQPGRDGQPGQAGQPG 218
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +3
Query: 723 GQPXGEXXXGXWGXPPXXGXP-GPXGPGXXGXGXREXXHXXGGKXGXXXXXGXNXEK 890
GQP G G P G P GP PG G + G G G + EK
Sbjct: 231 GQPGPRGPPGQAGSPGGNGQPGGPGQPGQRGSDGQPGNDGQPGAPGQPGQSGGSGEK 287
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +3
Query: 663 LXGXXXXGXGAGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXGP 800
L G AG D G P + G G P G PGP GP
Sbjct: 245 LPGPWGPPGSAGMPGEDGYAGTPGEKGWPGPPGAPGPGGMPGPNGP 290
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +3
Query: 663 LXGXXXXGXGAGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXGP 800
L G AG D G P + G G P G PGP GP
Sbjct: 245 LPGPWGPPGSAGMPGEDGYAGTPGEKGWPGPPGAPGPGGMPGPNGP 290
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -3
Query: 802 PGPXG-PGXPXXGGXPXFPXXLSPXGWPXR-XSRXXPPAPXPXXXXPXSGCR 653
PGP G PG P G P P P G P + S P AP SG R
Sbjct: 236 PGPSGAPGAPGGPGYPGPPGQKGPSGAPGQPGSDGNPGAPGQPGQSGGSGNR 287
>AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen protein
88 protein.
Length = 302
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +3
Query: 693 AGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXG-PGXXG 812
AG + GQP G G G P G PG G PG G
Sbjct: 162 AGSPGAPGQDGQPGGPGAQGDAGAPGNDGTPGQDGAPGQNG 202
>Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical
protein C12D8.8 protein.
Length = 295
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +3
Query: 717 RXGQPXGEXXXGXWGXPPXXGXPGPXG-PGXXGXGXREXXHXXGGKXG 857
R GQP G G P G PG G PG G + + GK G
Sbjct: 168 RAGQPGYSGPRGNDGFPGLPGPPGENGQPGQSGKDGQPGRNGADGKRG 215
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 690 GAGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXGP 800
G G R GQP + G G P G GP GP
Sbjct: 216 GHGSPGAPGRAGQPGRQGAPGNPGRPGERGPSGPCGP 252
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +3
Query: 723 GQPXGEXXXGXWGXPPXXGXPGPXGP-GXXGXGXREXXHXXGGKXG 857
G+P + G G P G PGP GP G G + G+ G
Sbjct: 160 GEPGPQGRDGMGGRPGNMGRPGPPGPAGDPGQAGSKGAPGTHGRQG 205
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Frame = +3
Query: 696 GGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXG-PGXXG-XGXREXXHXXG--GKXGXX 863
G R + G P G G P G PGP G PG G G H G G+ G
Sbjct: 163 GNGGRPGQRGTPGEAGTPGPVGEPGETGGPGPQGRPGQRGEPGQPGTVHTPGNPGRPGPQ 222
Query: 864 XXXGXNXE 887
G E
Sbjct: 223 GPRGQQGE 230
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -3
Query: 796 PXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAP 689
P PG P G P P P G R PP P
Sbjct: 205 PSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGP 240
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -3
Query: 796 PXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAP 689
P PG P G P P P G R PP P
Sbjct: 205 PSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGP 240
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/68 (27%), Positives = 20/68 (29%)
Frame = -3
Query: 856 PLFPPLXWXXSRXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAPXPXX 677
P PP R P P G P P G P + P SR PP
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMP 334
Query: 676 XXPXSGCR 653
P G R
Sbjct: 335 PPPPPGMR 342
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 693 AGGXXRDXRXGQPXGEXXXGXWGXPPXXGXPGPXGP 800
AG GQP G G P G PGP GP
Sbjct: 149 AGNPGPKGPPGQPGAPGEQGPNGRPGAPGAPGPQGP 184
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = +3
Query: 750 GXWGXP---PXXGXPGPXGPGXXGXGXREXXHXXGGKXGXXXXXGXN 881
G WG P G PG GPG G G + GG+ G G N
Sbjct: 18 GQWGPGFGGPGFGGPGSGGPGPRGPG---EWNNGGGRGGFGGNNGWN 61
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 723 GQPXGEXXXGXWGXPPXXGXPGPXGP 800
G P G G G P G PGP GP
Sbjct: 178 GGPGGPGEGGDGGRPGNPGRPGPAGP 203
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Frame = -3
Query: 811 PXXPGPXGP----GXPXXGGXPXFPXXLSPXGWP 722
P PGP GP G P G P P + P G P
Sbjct: 245 PGQPGPKGPPGPDGKPGADGNPGQPGPVGPPGTP 278
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/68 (27%), Positives = 20/68 (29%)
Frame = -3
Query: 856 PLFPPLXWXXSRXPXPXXPGPXGPGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAPXPXX 677
P PP R P P G P P G P + P SR PP
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMP 344
Query: 676 XXPXSGCR 653
P G R
Sbjct: 345 PPPPPGMR 352
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Frame = -3
Query: 811 PXXPGPXGP----GXPXXGGXPXFPXXLSPXGWP 722
P PGP GP G P G P P + P G P
Sbjct: 245 PGQPGPKGPPGPDGKPGADGNPGQPGPVGPPGTP 278
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +3
Query: 723 GQPXGEXXXGXWGXPP--XXGXPGPXGPGXXGXG 818
G P G G +G PP G PG GP G G
Sbjct: 398 GAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPG 431
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = -3
Query: 799 GPXG-PGXPXXGGXPXFPXXLSPXGWPXRXSRXXPPAP 689
GP G PG P G P P P G P + P P
Sbjct: 226 GPPGQPGTPGQNGQPGQPGPKGPSGQPGQPGSDGNPGP 263
>AC024838-8|AAF60822.1| 234|Caenorhabditis elegans Thaumatin family
protein 6 protein.
Length = 234
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 826 SRXPXPXXPGPXGPGXPXXGG 764
+R P P PG GPG P GG
Sbjct: 24 NRCPFPVWPGIVGPGNPEGGG 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,573,295
Number of Sequences: 27780
Number of extensions: 209454
Number of successful extensions: 2178
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1931
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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