Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A23
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    45   1e-05
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    29   0.90 
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    27   2.8  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   2.8  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   3.6  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   4.8  

>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 25/139 (17%), Positives = 64/139 (46%)
 Frame = +1

Query: 274 SRVTEQDKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGKRDRAXXXXXXXXYQ 453
           S++ ++D+++                +E   + +  +A+K L +  +  A          
Sbjct: 6   SKINDKDRSILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLY 65

Query: 454 ENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEES 633
             L+  T  QL  +EQL   +EF  I+  V+ GL+ G   ++++   + ++ + +I  + 
Sbjct: 66  SGLITQTYGQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDR 125

Query: 634 REGIDKQREIDELISGQLT 690
            E +    E+++++ G+++
Sbjct: 126 DEAMSYVDEVNDMLQGRMS 144


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 19/93 (20%), Positives = 41/93 (44%)
 Frame = +1

Query: 412 RDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHD 591
           + RA          E+ L     Q   +EQ     E  +  +  +  ++     LK    
Sbjct: 62  KQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQETARQLKSQSK 121

Query: 592 ILNIDEIEKIMEESREGIDKQREIDELISGQLT 690
            ++I++IEK+ +E ++ +D   E++E++   +T
Sbjct: 122 NVSIEKIEKLQDEIQDYMDAAGELNEVLGQNMT 154


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 460 LLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGN 567
           LLHN D +LE+LE++  D+     E +     ++GN
Sbjct: 438 LLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGN 473


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 508 HDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQRE-IDELIS 678
           +DL +    +   + + + NV L+KVHD    ++ +  ++ +REGI+   + I +L+S
Sbjct: 299 YDLSYLTEFLSTREAMTSLNVNLEKVHDWEECND-DVALQYAREGIESSSKLIQDLVS 355


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 484 LEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILN-IDEIEKIMEESREGIDKQRE 660
           LEK+ QLT + +  Q+E+ +L         L K +D++N ++  +  +++ R   ++ R 
Sbjct: 527 LEKINQLTSEKQILQVELDML---------LNKENDLINDVESSQSSLDKLRNDAEENRN 577

Query: 661 I 663
           I
Sbjct: 578 I 578


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 290  CSVTLLTTFLCLPNKAPILFVLLQYKICIFSNMNEHLSQFI 168
            C   LL +FL   N   I    +  +IC  ++ NEH  Q++
Sbjct: 1156 CIENLLDSFLSKTNSYKIALNTVLVRICEEASRNEHSDQYL 1196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,857
Number of Sequences: 5004
Number of extensions: 41291
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)