Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_A23
(902 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024844-3|AAK29955.1| 208|Caenorhabditis elegans Hypothetical ... 122 5e-28
U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical pr... 52 7e-07
U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical p... 41 0.001
U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical pr... 41 0.001
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 36 0.052
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 33 0.28
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 31 0.85
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 31 0.85
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 31 0.85
AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical... 28 7.9
AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage ... 28 7.9
>AC024844-3|AAK29955.1| 208|Caenorhabditis elegans Hypothetical
protein Y65B4A.3 protein.
Length = 208
Score = 122 bits (293), Expect = 5e-28
Identities = 61/153 (39%), Positives = 96/153 (62%), Gaps = 2/153 (1%)
Frame = +1
Query: 238 MGALFGKHKKVVSR--VTEQDKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGK 411
MG +F K +K V++QD A+ E LEK+R+LAK+L+++G+
Sbjct: 1 MGGIFSKKEKSPKSAPVSDQDNAILALKTQRDKMKQMIKRKENCLEKERQLAKQLIKDGR 60
Query: 412 RDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHD 591
+DRA YQE ++ T L K+EQ+ +DLEFA+++ +V DGL+ GN ALKK++
Sbjct: 61 KDRALLLLKKKRYQEKIIDQTLNHLSKIEQMVNDLEFAEVQQRVTDGLRQGNEALKKMNQ 120
Query: 592 ILNIDEIEKIMEESREGIDKQREIDELISGQLT 690
+ +IDEI++IMEE++E + Q EI ++SGQL+
Sbjct: 121 LFDIDEIDRIMEETKEAAEYQEEISNMLSGQLS 153
>U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical
protein R12C12.5 protein.
Length = 236
Score = 51.6 bits (118), Expect = 7e-07
Identities = 36/144 (25%), Positives = 62/144 (43%)
Frame = +1
Query: 256 KHKKVVSRVTEQDKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGKRDRAXXXX 435
K K + D+A+ EL +E++ + AKK ++ K+
Sbjct: 25 KEKSRKRKAPTADEAIGNLRDAEELLIKKQEYFELRIEQEVESAKKYMKTNKKMALAALR 84
Query: 436 XXXXYQENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIE 615
Y++ L D L KLE LE + +V+D L LKK H ++ID++
Sbjct: 85 KKKHYEQEL-SRIDGVLTKLEAQRTALENVGMHNEVIDVLGKTTETLKKEHAKMDIDKVH 143
Query: 616 KIMEESREGIDKQREIDELISGQL 687
+M+E +G+ E++E IS +
Sbjct: 144 DLMDEIADGLAMSEELNEAISAPI 167
>U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical
protein C37C3.3 protein.
Length = 265
Score = 40.7 bits (91), Expect = 0.001
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Frame = +1
Query: 352 IELNLEKDRKL-AKKLLEEGKRDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQ 528
+E ++ RK A K + KR +++ L+H D L LE LE A
Sbjct: 88 LEKKIDDVRKQNAVKYGTKNKRMALQCLSRKKAFEKQLIH-IDGVLATLEHQRETLENAS 146
Query: 529 IEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQREIDELISGQLT 690
+VL +K + ALK VH+ ++ D++ +M + ID+QRE+ + I+ ++
Sbjct: 147 TNAEVLTVMKLASDALKAVHNNMDSDQVRDMM----DNIDEQREVAKEIADAIS 196
>U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical
protein C56C10.3 protein.
Length = 221
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/109 (26%), Positives = 51/109 (46%)
Frame = +1
Query: 352 IELNLEKDRKLAKKLLEEGKRDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQI 531
+E + +++ A K + KR +++ L H D L + LE A
Sbjct: 40 LEKKVIDEKQNAVKYGTKNKRMALQCLNRKRNFEKQLAH-IDGVLSTIGYQREALENAST 98
Query: 532 EIQVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQREIDELIS 678
+VL+ + T + ALK H+ ++ID++ +ME+ E + EI E IS
Sbjct: 99 NAEVLNVMGTASKALKAAHNNMDIDQVHDLMEDIAEQQEVANEIAEAIS 147
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 35.5 bits (78), Expect = 0.052
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
Frame = +1
Query: 238 MGALFGKHKKVVSRVTEQDKAVXXXXXXXXXXXXXXXXIELNLEKDRKLAKKLLEEGKRD 417
M +FG KKV + + A+ ++ +L K R K+ E ++
Sbjct: 1 MNRIFGTGKKVPP--PDLNNAISNVESRSDSIDKKIQKLDQDLMKLRDQMSKMREGPSKN 58
Query: 418 RAXXXXXXXXYQENLLHNTDTQLEK----LEQLTHDLEFAQIEIQVLDGLKTGNVALKKV 585
Q+ + N QL++ ++Q ++ + + +K G ++K
Sbjct: 59 LIKQKALRVLKQKRMYENQKGQLDQQAFNMDQSNFAIQGMKDNQVTVAAMKDGLKTMQKE 118
Query: 586 HDILNIDEIEKIMEESREGIDKQREIDELISGQ 684
+ +NID+IE + ++ + +D EI E +S Q
Sbjct: 119 YKKMNIDQIEDLQDQMEDMLDMNNEIQEAMSRQ 151
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 33.1 bits (72), Expect = 0.28
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Frame = +1
Query: 367 EKDRKLAKKLLEEGKRDRAXXXXXXXXYQENLLHNTDTQLEKLEQLTHDLEFAQI--EIQ 540
EK R + LEE DR Q L + +L KL Q DLE A I E
Sbjct: 1143 EKARNEMQMELEE-LGDRLDEAGGATQAQIELNKKREAELAKLRQ---DLEDAAINSETS 1198
Query: 541 VLDGLKTGNVALKKVHDILNIDEIEKIMEE-SREGIDKQREIDEL 672
+ K N A+ ++ D +D I+K+ + RE DKQRE+DEL
Sbjct: 1199 MAALRKKHNDAVAELSD--QLDTIQKMRGKLEREKNDKQREVDEL 1241
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 31.5 bits (68), Expect = 0.85
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 454 ENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNV-ALKKVHDILNIDEIEKIMEE 630
EN LH+ ++EKL L L+ + +I G+V ALK+ L +E+EK+ E
Sbjct: 850 ENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALKETIRKLE-NELEKLRNE 908
Query: 631 SREGIDKQREIDELISGQLT 690
++E + K+ + + QL+
Sbjct: 909 NKELVGKEARARDAANQQLS 928
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 31.5 bits (68), Expect = 0.85
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 454 ENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNV-ALKKVHDILNIDEIEKIMEE 630
EN LH+ ++EKL L L+ + +I G+V ALK+ L +E+EK+ E
Sbjct: 923 ENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALKETIRKLE-NELEKLRNE 981
Query: 631 SREGIDKQREIDELISGQLT 690
++E + K+ + + QL+
Sbjct: 982 NKELVGKEARARDAANQQLS 1001
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 31.5 bits (68), Expect = 0.85
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 454 ENLLHNTDTQLEKLEQLTHDLEFAQIEIQVLDGLKTGNV-ALKKVHDILNIDEIEKIMEE 630
EN LH+ ++EKL L L+ + +I G+V ALK+ L +E+EK+ E
Sbjct: 923 ENELHSRSGEIEKLNDLNQRLQKEKQDILNQKLKLDGDVQALKETIRKLE-NELEKLRNE 981
Query: 631 SREGIDKQREIDELISGQLT 690
++E + K+ + + QL+
Sbjct: 982 NKELVGKEARARDAANQQLS 1001
>AL132904-24|CAC35834.2| 459|Caenorhabditis elegans Hypothetical
protein Y111B2A.4 protein.
Length = 459
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 466 HNTDTQLEKLEQLTHDLEFAQIEI-QVLDGLKTGNVALKKVHDILN--IDEIEKIMEESR 636
HN+D Q+E L+ +L A E+ + +G K + A + ++ LN ID ++ + E
Sbjct: 286 HNSDAQIEDLKTQNKELANAYTELNEEFEGFKEQHTATQNANNDLNRRIDSLKANLIEYE 345
Query: 637 E 639
E
Sbjct: 346 E 346
>AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage a
trois) tfiih subunitprotein 1 protein.
Length = 310
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 538 QVLDGLKTGNVALKKVHDILNIDEIEKIMEESREGIDKQREIDELI 675
+++D L+ NVA + + D +IEK +EE E ++R E++
Sbjct: 181 KIMDELRDSNVAAEVILDRERKKQIEKELEEKEEQEKRKRRNKEML 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,225,140
Number of Sequences: 27780
Number of extensions: 220590
Number of successful extensions: 608
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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