Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A23
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   5.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   5.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   6.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 208 HILYCNKTNKMGALFGKHKKVVSRVTEQ 291
           H++   K  K+  LFGK +K++  V E+
Sbjct: 435 HLIEYKKMLKIKRLFGKDRKIMDMVREK 462


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 379 FCLFLGLIQFFSDIVSAYLAVVL 311
           F   LGLI     IVS+Y A+VL
Sbjct: 68  FLFVLGLIVPVFTIVSSYAAIVL 90


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/43 (20%), Positives = 20/43 (46%)
 Frame = +1

Query: 505 THDLEFAQIEIQVLDGLKTGNVALKKVHDILNIDEIEKIMEES 633
           +H L +  +E  +    +  N+  + + DI N     K+M ++
Sbjct: 273 SHSLYYVNMEPFMKSQYEENNIEYEGIQDIFNTQSSAKVMSKN 315


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/35 (22%), Positives = 22/35 (62%)
 Frame = +1

Query: 553 LKTGNVALKKVHDILNIDEIEKIMEESREGIDKQR 657
           ++  ++ L    + LN+D+I+ ++E+  E + ++R
Sbjct: 19  VRCDDITLCLKQENLNLDDIDSLLEDESERMLRKR 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,105
Number of Sequences: 438
Number of extensions: 2869
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)