Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_A22
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 31 0.29
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 30 0.38
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 29 0.67
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 28 1.6
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 28 1.6
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 28 2.1
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 27 2.7
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 2.7
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 27 2.7
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 27 4.7
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 6.3
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 26 6.3
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 26 6.3
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 26 8.3
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 8.3
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 26 8.3
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 30.7 bits (66), Expect = 0.29
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Frame = +1
Query: 565 VKCLAWHPHTTKIAVATVDDN-----VRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSASE 729
V +AWHP+ +DDN + + T + Q SL+W P +
Sbjct: 216 VNSIAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNILTGHQKAALSLSWCPEDPTF 275
Query: 730 LAVGCEQG-VIVWTVDPNLMFTKPSSSNAVLLKKKWAQSSNRRELV 864
L + G +VW V+ S K W S++ R V
Sbjct: 276 LLSSGKDGRAMVWNVETGESLGSFPRSGNWYTKSSWCPSNSNRVAV 321
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 30.3 bits (65), Expect = 0.38
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 565 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSASELAVGC 744
+ + W T IA +D VR++ S F + + L+W P LA GC
Sbjct: 107 IVAIDWSFDGTYIATGGMDSQVRLWKSSTGFEFITAFETVDEIVWLSWHP-KGLFLAAGC 165
Query: 745 EQGVI-VWTV 771
G I +W++
Sbjct: 166 NDGSIWMWSL 175
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 29.5 bits (63), Expect = 0.67
Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 15/204 (7%)
Frame = +1
Query: 268 LHHH-RTSDENISMYIDVEDNLLKK----ITSVWYKQGFLEALSVA-ADPSVNRESPTLA 429
LHH T + ++Y V N L K +T ++ Q +V S+N T+
Sbjct: 79 LHHEDETIEIQDNLYTSVFHNGLMKTEDHLTLLYTPQAVFRVRAVTRCTASMNGHDGTI- 137
Query: 430 VTASYILKVANILTAFRYFLQPHLKDIGPKI-VANYSRTRNWGQVPVKCLAWHPHTTKIA 606
++A + ++ L L D + +A NW V C+AW P + IA
Sbjct: 138 ISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNW----VSCVAWAPDASIIA 193
Query: 607 VATVDDNVRVY-CSEVTFVSTLKCKAQGHVSSLNWRPLSASE------LAVGCEQGVI-V 762
++D+ +R + + + + + + +L W+PL + LA G + + +
Sbjct: 194 TGSMDNTIRFWDPKKGSPIGDALRRHTKPIMALCWQPLHLAPDSGPYLLASGSKDNTVRI 253
Query: 763 WTVDPNLMFTKPSSSNAVLLKKKW 834
W V + S A + +W
Sbjct: 254 WNVKLRTLLFTLSGHTAPITCVRW 277
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +1
Query: 163 CKLNEVYCCGNARYGNISTFSNATKKHPIINVTRDLHHHRTSDENI 300
C EVYC YG ++ K I+ + ++ + H +D +
Sbjct: 480 CNALEVYCPAQREYGRLNVVGTLMSKRKIMKLVKEGYVHGWNDPRL 525
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 514 PKIVANYSRTRNWGQVPVKCLAWHPHTTKIAVATVDDNVRVYCS---EVTFVSTLKCKAQ 684
PK +R Q P++ L W+ +++A ++ +V V+ S + F + L +
Sbjct: 10 PKFPELKTRDLQGQQGPIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTELGNRGY 69
Query: 685 GHVSSLNWRPLSASEL 732
G V L W P + L
Sbjct: 70 GLVEQLVWDPTHSDRL 85
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 682 QGHVSSLNWRPLSASELAVGCEQG-VIVWTVD 774
QG + SL W LS S LA G V+VW D
Sbjct: 24 QGPIRSLGWN-LSGSRLASSSSSGSVLVWNSD 54
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = +1
Query: 565 VKCLAWHPHTTKIAVATVDDNVRVY---CSEVTFVSTLKCKAQGHVSSLNWRPLSASELA 735
+ C+AW P + V N+ VY S + V T+K Q V L W +
Sbjct: 247 ISCMAWSPINWTLLVGGSTGNIYVYRRTKSMMRRVHTIKKVHQEQVCGLEWNYDGTQFAS 306
Query: 736 VGCEQGVIVWTVD 774
G + V ++ +D
Sbjct: 307 GGNDNLVCIFDID 319
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 574 LAWHPHTTKIAVATVDDNVRVYCSEV-TFVSTLKCKAQGHVSSLNWRPLSASELAVGCEQ 750
+A HP A ++ D +VR+Y S V + + + WRP+ LAV
Sbjct: 296 VAAHPMLPLFATSSQDKSVRIYNSNTYNLVHVIDGFHTRSIRRVAWRPIERPVLAVASFD 355
Query: 751 GVI 759
V+
Sbjct: 356 SVV 358
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 565 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSASELAVGC 744
V +A P+ IAV ++D +RV+ T V L+ + V S+ + P S+ L+
Sbjct: 446 VTAIAISPNDQFIAVGSLDQIIRVWSVSGTLVERLEGHKES-VYSIAFSPDSSILLSGSL 504
Query: 745 EQGVIVW 765
++ + VW
Sbjct: 505 DKTIKVW 511
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = +1
Query: 577 AWHPHTTKIAVATVDDNVRVYCSE--VTFVSTLKCKAQGHVSSLNWRPLSASELAVGCEQ 750
AWHP AVA+ D V V + + L + V+ ++W A +
Sbjct: 193 AWHPKNGTFAVASTDHFVSVISPDDWLPLYKLLPKENHSGVTDISWSSNGMYIAASFKKG 252
Query: 751 GVIVWTVDPNLMFTKPSSSNAVLL 822
G+++W + + + S V L
Sbjct: 253 GILIWDTQSHEVVVELPYSTVVAL 276
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 827 KNGHSPVTDVSWSXTG 874
K HS VTD+SWS G
Sbjct: 227 KENHSGVTDISWSSNG 242
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 4.7
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = +1
Query: 556 QVPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSAS--E 729
Q V C+++HP+ +A + D R++ +V T++ H S ++ +SA
Sbjct: 487 QNDVDCVSFHPNAAYLATGSSDHTTRMW--DVRTGGTVRV-FNAHHSPVSALCMSADGLS 543
Query: 730 LAVGCEQGVI-VWTV---DPNLMFTKPSS 804
LA E G+I VW + + ++ F K SS
Sbjct: 544 LASADESGIIKVWDLRSSNQHVSFVKHSS 572
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 565 VKCLAWHPHTTKIAVATVDDNVRVY 639
V C A+HP I A++D VRV+
Sbjct: 140 VMCAAFHPSEDLIVSASLDQTVRVW 164
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 565 VKCLAWHPHTTKIAVATVDDNVRVY 639
V C +HPH I A+ D +RV+
Sbjct: 259 VSCCLFHPHQELILSASEDKTIRVW 283
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 556 QVPVKCLAWHPHTTKIAVATVDDNVRVY-CSEVTFVSTLKCKAQGHVSSLNWRPLSASEL 732
Q + CLA + T++ +D +V++Y S+ V + K G + S+ P S + L
Sbjct: 250 QKSITCLAMNSENTRLLSGGLDGHVKIYNISDWKVVHGM--KYSGPILSMGLSPDSCN-L 306
Query: 733 AVGCEQGVI 759
VG G +
Sbjct: 307 VVGMSNGTL 315
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 565 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGH 690
+ C+ W ++ V T D+N VYC ++ + T GH
Sbjct: 192 ITCMNWSKSNHRM-VYTADNNNLVYCYDIANLKTPLSVLSGH 232
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/67 (22%), Positives = 33/67 (49%)
Frame = +1
Query: 598 KIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSASELAVGCEQGVIVWTVDP 777
+I VA+VD + + + ++++C Q +SS++W P L + + VW+++
Sbjct: 73 QICVASVDKVFVLDIVQHDYYASIQCD-QDPLSSISWSPSGELLLWSSFDSKITVWSLNT 131
Query: 778 NLMFTKP 798
+ P
Sbjct: 132 QKGYLLP 138
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/66 (16%), Positives = 31/66 (46%)
Frame = +1
Query: 574 LAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSASELAVGCEQG 753
L W + + +D+++R+Y + + T K +V + W PL+ ++ ++
Sbjct: 134 LCWSVDSNFLIAGAMDNSLRLYDAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVSESSDRS 193
Query: 754 VIVWTV 771
+ ++ +
Sbjct: 194 ICLYEI 199
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 691 VSSLNWRPLSASELAVGCEQGVIVWTVDPN 780
V S++W P L+ + +IVW D N
Sbjct: 271 VMSVDWHPTKEMILSSSADSSMIVWEPDTN 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,208
Number of Sequences: 5004
Number of extensions: 68875
Number of successful extensions: 176
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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