Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A20
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    29   0.73 
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    29   0.73 
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   1.7  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   3.9  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           27   5.1  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   6.8  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   9.0  

>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 377 SVPTKT---EDGIPIRKLYVTNLPPKTTRTELYGVXA-QYGLIXSCWXKMGDKGP 529
           S PT T   +   P   +YV NLPP T+  EL  + + Q G    C+   G+ GP
Sbjct: 411 STPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGN-GP 464


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 329 SVATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVXAQYGLIXSCW 505
           +V+ +++  +A +     P       P++ +YV NLPP T   E+     + G I S W
Sbjct: 87  NVSRVTSPNVANFAPGYFPLPNNTTQPVKTVYVGNLPPNTPIDEILS-CVRTGPIESAW 144


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 419 LYVTNLPPKTTRTELYGVXAQYGLIXSCW 505
           LYV+NLP  T+ + ++ + + YG +   W
Sbjct: 2   LYVSNLPVGTSSSAIHALFSAYGNVKDIW 30


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
 Frame = +2

Query: 200 YNTETYLKDNSFLN*KNT----IMYNDEEDNERYF 292
           +NT   L+D+ FL  K T    I  +DEEDNE  F
Sbjct: 264 FNTTHTLEDDKFLQGKGTSNNPISLSDEEDNEINF 298


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = +2

Query: 275 DNERYFSPDLLHVVRXXVSV-----ATISNLELAPYGIRSVPT 388
           +NER  +   L +V+  ++V     AT S L+LAP  ++++PT
Sbjct: 280 NNERELTKHKLPIVKPKLAVFPSNQATASTLQLAPPPVQAIPT 322


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 338 TISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKTTRTELYGVXAQYGLI 493
           TI +L L    ++ VP      +P   L + NLP + T  +LY    Q G++
Sbjct: 181 TIPSLGLEDISMQVVPNAFASTLP---LSILNLPAEVTPIDLYNHFKQAGVV 229


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 245 KNTIMYNDEEDNERYFSPDLLHVVRXXVSVATISN 349
           KN + YND  DN      DL  + R    V+ +SN
Sbjct: 426 KNALDYNDSADNIDEHKDDLKELPRRLQMVSKLSN 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,382
Number of Sequences: 5004
Number of extensions: 43690
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)