Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A20
         (954 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97188-1|AAC35208.1|  579|Homo sapiens putative RNA binding prot...    33   2.0  
U76705-1|AAD09223.1|  579|Homo sapiens Koc1 protein.                   33   2.0  
BC065269-1|AAH65269.1|  579|Homo sapiens insulin-like growth fac...    33   2.0  
AF117108-1|AAD09828.1|  579|Homo sapiens IGF-II mRNA-binding pro...    33   2.0  
BC015463-1|AAH15463.1|  125|Homo sapiens splicing factor 3B, 14 ...    31   8.2  
AF401310-1|AAK94041.1|  125|Homo sapiens pre-mRNA branch site pr...    31   8.2  
AF184213-1|AAG09698.1|  125|Homo sapiens ht006 protein protein.        31   8.2  
AF151868-1|AAD34105.1|  125|Homo sapiens CGI-110 protein protein.      31   8.2  
AC008073-2|AAY14664.1|  125|Homo sapiens unknown protein.              31   8.2  

>U97188-1|AAC35208.1|  579|Homo sapiens putative RNA binding protein
           KOC protein.
          Length = 579

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 383 PTKTEDGIP----IRKLYVTNLPPKTTRTELYGVXAQYGLIXSC 502
           P + E  +P    IRKL + N+PP      L  +  QYG++ SC
Sbjct: 67  PIEVEHSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESC 110


>U76705-1|AAD09223.1|  579|Homo sapiens Koc1 protein.
          Length = 579

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 383 PTKTEDGIP----IRKLYVTNLPPKTTRTELYGVXAQYGLIXSC 502
           P + E  +P    IRKL + N+PP      L  +  QYG++ SC
Sbjct: 67  PIEVEHSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESC 110


>BC065269-1|AAH65269.1|  579|Homo sapiens insulin-like growth factor
           2 mRNA binding protein 3 protein.
          Length = 579

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 383 PTKTEDGIP----IRKLYVTNLPPKTTRTELYGVXAQYGLIXSC 502
           P + E  +P    IRKL + N+PP      L  +  QYG++ SC
Sbjct: 67  PIEVEHSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESC 110


>AF117108-1|AAD09828.1|  579|Homo sapiens IGF-II mRNA-binding
           protein 3 protein.
          Length = 579

 Score = 32.7 bits (71), Expect = 2.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 383 PTKTEDGIP----IRKLYVTNLPPKTTRTELYGVXAQYGLIXSC 502
           P + E  +P    IRKL + N+PP      L  +  QYG++ SC
Sbjct: 67  PIEVEHSVPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESC 110


>BC015463-1|AAH15463.1|  125|Homo sapiens splicing factor 3B, 14 kDa
           subunit protein.
          Length = 125

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 413 RKLYVTNLPPKTTRTELYGVXAQYGLI 493
           R LY+ NLP K T  E+Y +  +YG I
Sbjct: 19  RILYIRNLPYKITAEEMYDIFGKYGPI 45


>AF401310-1|AAK94041.1|  125|Homo sapiens pre-mRNA branch site
           protein p14 protein.
          Length = 125

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 413 RKLYVTNLPPKTTRTELYGVXAQYGLI 493
           R LY+ NLP K T  E+Y +  +YG I
Sbjct: 19  RILYIRNLPYKITAEEMYDIFGKYGPI 45


>AF184213-1|AAG09698.1|  125|Homo sapiens ht006 protein protein.
          Length = 125

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 413 RKLYVTNLPPKTTRTELYGVXAQYGLI 493
           R LY+ NLP K T  E+Y +  +YG I
Sbjct: 19  RILYIRNLPYKITAEEMYDIFGKYGPI 45


>AF151868-1|AAD34105.1|  125|Homo sapiens CGI-110 protein protein.
          Length = 125

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 413 RKLYVTNLPPKTTRTELYGVXAQYGLI 493
           R LY+ NLP K T  E+Y +  +YG I
Sbjct: 19  RILYIRNLPYKITAEEMYDIFGKYGPI 45


>AC008073-2|AAY14664.1|  125|Homo sapiens unknown protein.
          Length = 125

 Score = 30.7 bits (66), Expect = 8.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 413 RKLYVTNLPPKTTRTELYGVXAQYGLI 493
           R LY+ NLP K T  E+Y +  +YG I
Sbjct: 19  RILYIRNLPYKITAEEMYDIFGKYGPI 45


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,421,477
Number of Sequences: 237096
Number of extensions: 1829835
Number of successful extensions: 2369
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2368
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12603135794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)