Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A19
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   177   2e-45
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    30   0.47 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    29   0.62 
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    28   1.9  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   4.4  
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.8  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   7.7  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  177 bits (431), Expect = 2e-45
 Identities = 82/119 (68%), Positives = 98/119 (82%), Gaps = 1/119 (0%)
 Frame = +3

Query: 246 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 425
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 426 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPEWK 599
           L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP  K
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGK 124



 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 36/43 (83%), Positives = 40/43 (93%)
 Frame = +2

Query: 710 GXHNLYKMFREGLLKVPAINVNDSVTKSKFDNLYGCRESLLDG 838
           G HNLYKMF+E  LKVPAINVNDSVTKSKFDNL+GC+ESL+DG
Sbjct: 161 GVHNLYKMFKENKLKVPAINVNDSVTKSKFDNLFGCKESLVDG 203



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 24/33 (72%), Positives = 30/33 (90%)
 Frame = +1

Query: 592 NGKPLNMILDDGGDLTNLVHTKYPDLLKDVKGI 690
           +GKPLNMILDDGGDLT LVH ++P+LL D++GI
Sbjct: 122 SGKPLNMILDDGGDLTALVHERHPELLVDIRGI 154


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
 Frame = -2

Query: 377 YSGTFEYFSWSIFPTTCHKAWHFFLC*H------NFFSAPFSQFLVSDFVRRLHFVVQSL 216
           Y   +  ++W  F  T +K  H+FL  H      +F S   S F        LH +V   
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMGC 415

Query: 215 IYLXVNSLAVFF 180
           I L +    +FF
Sbjct: 416 ITLKIRGYGLFF 427


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 633 VTPIIQDHIERLSIQGRSMFVQYTKYTRHQFLPSRH 526
           VTPI QDH + +++QG       + Y +HQ+L S H
Sbjct: 134 VTPIKQDHQKPMNLQGFP-----SAYQQHQYLQSNH 164


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -1

Query: 627 PIIQDHIERLSIQGRSMFVQYTKYTRHQFLPSRHRWVFLRQPVQLRPRLVYYKCYCWTIV 448
           P  +  +E  +I  +S F        H +L    R V    PV+LRP  VY +  C    
Sbjct: 441 PYSEGWLEDQTILLKSYFDTSFSLDFHVYLIGLFRKVLFACPVELRPE-VYARMLC---- 495

Query: 447 PLLPILLKSQ*EPLF--VLSCVSCRLFW 370
           PL+  L KS  E +   V+S V C L W
Sbjct: 496 PLVKSLDKSSSEVIIDEVISLV-CDLSW 522


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +2

Query: 149 YFRYFNKNNLKRKQQV---NLPVGISNFVLQNEASLQNR*REIG*MGPKRNYVSRERNAR 319
           YF   N +N++ K++    NL   +S F    E + QN   +   +  K++ + ++RN  
Sbjct: 174 YFDVINDSNVENKEETKDRNLDRALSKFTQSREKNEQNLSSKASVLRNKKSILLKKRNQD 233

Query: 320 PYGMSSEICSS*NTQRCQNSRQLTHD 397
              +++E   S N           HD
Sbjct: 234 ETQLTTEEDFSANNDSTAKIETSIHD 259


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 683 FTSFKRSGYLVWTKFVKSPPSSKIILRGF-PFREDQCLFNTPNILVISFSLP 531
           +  F++ G L + K VK P + + + RGF  FR ++   +  N L ++  LP
Sbjct: 294 YNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEK---DCQNCLEMASQLP 342


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 819 LHPYKLSNLLFVTESLTLIAGTFKSPSRNILYKLCXPGCSFFSDTF 682
           + P+ L+    + E+ +  +   +S SR+I Y L  PG  FFS  F
Sbjct: 36  ISPFILTIDRSIVENTSGRSTLLRSVSRSIKYVLSKPGAFFFSAPF 81


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 287 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 466
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 467 H 469
           H
Sbjct: 150 H 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,251
Number of Sequences: 5004
Number of extensions: 67993
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)