Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_A18
(1044 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.088
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.36
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.36
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.47
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.62
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.4
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.9
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 2.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 3.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.8
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 26 7.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.088
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 721 PPTPXXXRXPPPXXRGAXXGPXXPRPPPPP 810
PP P PPP G P PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.3 bits (65), Expect = 0.47
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Frame = +1
Query: 724 PTPXXXRXPPPXXRGAXXGPXXPRPPP------PPXXPPXP 828
PTP P P GP P PPP PP PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Frame = +1
Query: 703 AXXXPHP-PTPXXXRXPPPXXRGAXXGPXXP-----RPPPPPXXPP 822
A P P P P P P G P P PPPPP PP
Sbjct: 738 AVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 419 PXPHDXPXTNXPXXRHPPPPQXXNAXPPHPP 511
P P P P PPPP A PP PP
Sbjct: 750 PVPPPAPIMGGPPP-PPPPPGVAGAGPPPPP 779
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.36
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +1
Query: 721 PPTPXXXRXPPPXXRGAXXGPXXPRPPPPPXXPPXPXPXTXXXPKNNP 864
PP PPP P P PP PP P P + NP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 30.7 bits (66), Expect = 0.36
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +1
Query: 715 PHPPTPXXXRXPPPXXRGAXXGPXXPRPPPPP--XXPPXPXP 834
P PP P PPP GP PPP P P P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 22.2 bits (45), Expect(2) = 8.4
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +3
Query: 354 APPPXXPXTPPPXP 395
APP TPPP P
Sbjct: 1698 APPQMSAPTPPPPP 1711
Score = 21.8 bits (44), Expect(2) = 8.4
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +3
Query: 489 TPXPPTPQXXXPPTXXDPRAXPP 557
TP PP PP+ A PP
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPP 1728
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.36
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = +2
Query: 419 PXPHDXPXTNXPXXRHPPPPQXXNAXPPHPPXXXSPHXXRPAXTXP 556
P P P P PP P+ A PP P +P +P+ P
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAP 1131
Score = 29.5 bits (63), Expect = 0.82
Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Frame = +1
Query: 721 PPTPXXXRXPPPXXRGAXXGPXXPRP-------PPPPXXPPXPXPXTXXXPKNNP 864
PP P PP + P P+P PPP PP P P P P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 315 SSKTPXXCQTXAKAPPPXXPXTPPPXP 395
SSK P A APP P T PP P
Sbjct: 1018 SSKAPPVPLPSADAPPIPVPSTAPPVP 1044
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 437 PXTNXPXXRHPPPPQXXNAXPPHPPXXXSPHXXRPAXTXP 556
P P PP P+ PP PP +P +P+ P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
Score = 27.1 bits (57), Expect = 4.4
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 721 PPTPXXXRXPPPXXRGAXXGPXXPRPPPPPXXPPXPXPXTXXXP 852
PP P PP P PPP PP P P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPV----PPPSTAPPVPTPSAGLPP 1228
Score = 26.6 bits (56), Expect = 5.8
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Frame = +1
Query: 715 PHPPTPXXXRXPPPXXRGAXXGP----XXPRPPPPPXXPPXPXPXTXXXPKNNP 864
P P P P P GA P P P P PP P P P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/46 (28%), Positives = 15/46 (32%)
Frame = +2
Query: 419 PXPHDXPXTNXPXXRHPPPPQXXNAXPPHPPXXXSPHXXRPAXTXP 556
P P P P PP P A P P +P P+ P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 26.2 bits (55), Expect = 7.6
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +1
Query: 715 PHPPTPXXXRXPPPXXRGAXXGPXXPRPPPPPXXPPXPXPXTXXXPKNNP 864
P P P P P GA P P P PP P P + P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGA-----PPVPKPSVAAPPVPAPSSGIPPVPKP 1184
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.47
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -1
Query: 942 WGXWGWXGWXCGXXGMGXGGXGXXVXGVV-FGGXXGXGVGGGXXXGGGWGAGXXGXXXG 769
+G +G G G G GG G G FGG G G GGG GG+G G G G
Sbjct: 210 FGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG-GFGGGL---GGFGGGPGGFGGG 264
Score = 30.3 bits (65), Expect = 0.47
Identities = 23/53 (43%), Positives = 25/53 (47%)
Frame = -1
Query: 939 GXWGWXGWXCGXXGMGXGGXGXXVXGVVFGGXXGXGVGGGXXXGGGWGAGXXG 781
G G+ G G G G GG G G FGG G G GGG GG+G G G
Sbjct: 222 GHGGFGGGPGGFEG-GPGGFGGGPGG--FGGGLG-GFGGGP---GGFGGGPGG 267
Score = 29.5 bits (63), Expect = 0.82
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = -1
Query: 909 GXXGMGXGGXGXXVXGVVFGGXXGXGVGGGXXXG-GGWGAGXXGXXXG 769
G G G G G FGG G G G G GG+G G G G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG 236
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -2
Query: 863 GLFLGXFXVXGXGXGGXXGGGGGRGXXGPXW 771
G F G G G GG GG GG GP W
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGH--GGPGW 273
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.62
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 715 PHPPTPXXXRXPPPXXRGAXXGPXXPRPPPP 807
P PP R PP G+ P PPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 29.9 bits (64), Expect = 0.62
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 721 PPTPXXXRXPPPXXRGAXXGPXXPRPPPPPXXPPXPXP 834
PP P PP G P P P P P P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 419 PXPHDXPXTNXPXXRHPPPPQXXNAXPPHPP 511
P P P +N P PPQ +A PP PP
Sbjct: 337 PPPPPPPRSNAAGSI-PLPPQGRSAPPPPPP 366
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +1
Query: 715 PHPPTPXXXRXPPPXXRGAXXGPXXPRPPPPPXXPPXP 828
P PPTP PP A P P PP P PP P
Sbjct: 128 PAPPTPQSELRPP---TSAPPRPSIP-PPSPASAPPIP 161
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/47 (40%), Positives = 20/47 (42%)
Frame = -1
Query: 909 GXXGMGXGGXGXXVXGVVFGGXXGXGVGGGXXXGGGWGAGXXGXXXG 769
G G GG G G FGG G GGG GG+G G G G
Sbjct: 138 GGRGGFRGGRGGSRGG--FGGNSRGGFGGGSR--GGFGGGSRGGSRG 180
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +2
Query: 419 PXPHDXPXTNXPXXRHPPPPQXXNAXPPHPPXXXSPHXXRPAXTXP 556
P H P T P HPP P N P P SP P T P
Sbjct: 165 PTQHHHPHTRPP--HHPPHPHFHNNNYPPPYCFQSP--VSPGATVP 206
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 3.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 796 PPPPPXXPP 822
PPPPP PP
Sbjct: 945 PPPPPPPPP 953
Score = 22.6 bits (46), Expect(2) = 3.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 790 PRPPPPPXXP 819
P PPPPP P
Sbjct: 905 PTPPPPPPLP 914
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +1
Query: 727 TPXXXRXPPPXXRGAXXGPXXPRPPPPPXXPP 822
+P PP A P PPPPP PP
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 748 PPPXXRGAXXGPXXPRPPPPP 810
PPP P P PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -3
Query: 427 GXWXXVXVXXWGXGGGVXGXXGG 359
G W + WG GG + G GG
Sbjct: 154 GTWQGITNIVWGIGGSLGGPLGG 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.140 0.503
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,532
Number of Sequences: 5004
Number of extensions: 27962
Number of successful extensions: 258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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