Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A17
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   8.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 733 FGGRGDLNSPYXLRXNLLPASILSRYITETWVA 831
           FG + D N  Y  R   +  +  +RYI E W A
Sbjct: 435 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNA 467


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 488 SFFVSKHERVSH-ATALFLPPHIYT 417
           SF VSKHE VS  +TA   P ++ T
Sbjct: 711 SFKVSKHEEVSRTSTAGQFPTNVAT 735


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 755 FKSPLPPKTNMRSPTATAVWKSLWE 681
           + + L P TN R+P  +  W+ +++
Sbjct: 266 YMASLTPDTNRRNPWFSEYWEEVFD 290


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 755 FKSPLPPKTNMRSPTATAVWKSLWE 681
           + + L P TN R+P  +  W+ +++
Sbjct: 356 YMASLTPDTNRRNPWFSEYWEEVFD 380


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 493 IRVSLCRSTREYHMLPHYSCRPTYIP 416
           I V  C++T   H L +  C P  IP
Sbjct: 24  IGVDECQATPVIHFLQYPGCVPKPIP 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,906
Number of Sequences: 438
Number of extensions: 6250
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)