Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A16
         (897 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY229970-1|AAP04481.1| 2645|Drosophila melanogaster bitesize iso...    32   0.93 
AE014297-1904|AAX52954.1| 2645|Drosophila melanogaster CG33555-P...    32   0.93 

>AY229970-1|AAP04481.1| 2645|Drosophila melanogaster bitesize
           isoform 2 protein.
          Length = 2645

 Score = 32.3 bits (70), Expect = 0.93
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 207 PTSSSRDKLSDDDWNQVRDFE-QREQKPRGPTQRSTN 314
           P  +S +   D D ++ R+ E Q EQKPR  TQRS N
Sbjct: 546 PDEASSNSSQDGDQDRERELEEQAEQKPRRTTQRSYN 582


>AE014297-1904|AAX52954.1| 2645|Drosophila melanogaster CG33555-PC,
           isoform C protein.
          Length = 2645

 Score = 32.3 bits (70), Expect = 0.93
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 207 PTSSSRDKLSDDDWNQVRDFE-QREQKPRGPTQRSTN 314
           P  +S +   D D ++ R+ E Q EQKPR  TQRS N
Sbjct: 546 PDEASSNSSQDGDQDRERELEEQAEQKPRRTTQRSYN 582


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,430,511
Number of Sequences: 53049
Number of extensions: 683342
Number of successful extensions: 1532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)