Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_A15
(960 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 0.082
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 31 1.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.6
CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical ... 30 2.1
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.1
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 2.8
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 30 2.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.7
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 29 3.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.7
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 4.9
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 4.9
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 4.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.5
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 6.5
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 6.5
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 8.6
U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical pr... 28 8.6
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 28 8.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 8.6
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 8.6
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 28 8.6
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 28 8.6
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.9 bits (64), Expect(2) = 0.082
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 445 SPGXKNPPXPGXRGXGXXGPPPXPP 519
S G PP P G GPPP PP
Sbjct: 532 STGAPTPPPPPPVGMANGGPPPPPP 556
Score = 23.8 bits (49), Expect(2) = 0.082
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 499 GPPPXPPP*TP 531
GPPP PPP P
Sbjct: 575 GPPPPPPPPPP 585
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 30.7 bits (66), Expect = 1.6
Identities = 26/85 (30%), Positives = 27/85 (31%), Gaps = 3/85 (3%)
Frame = +3
Query: 564 PPPPGGEXGXPXXXGXNRXXKNXXXRAQXGP---AXTEXXXGXXGXPQKXPPXPRXTXXK 734
PP P G G P G N GP TE G G P PP PR
Sbjct: 173 PPGPPGGPGGPGEGGDGGRPGNPGRPGPAGPRGEPGTEYKPGQPGRP--GPPGPRGEAGP 230
Query: 735 TARPPVXGGXNPHGEXKKKXKAXLP 809
+P G GE K A P
Sbjct: 231 AGQP---GSPGNDGESGKPGNAGRP 252
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRGXGXXGPPPXPPP 522
PG + G PP PG GPPP PPP
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 451 GXKNPPXPGXRGXGXXGPPPXPPP 522
G PP P G GPPP PPP
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 451 GXKNPPXPGXRGXGXXGPPPXPPP 522
G PP PG GPPP PPP
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPP 748
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 448 PGXKNPPXPGXRGXGXXGPPPXPPP 522
PG PP P G G PP PPP
Sbjct: 765 PGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRGXGXXGPPPXPPP 522
P G P PP P G PPP PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRGXGXXGPPPXPPP 522
PG + G PP PG GPPP PPP
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 451 GXKNPPXPGXRGXGXXGPPPXPPP 522
G PP P G GPPP PPP
Sbjct: 767 GCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 451 GXKNPPXPGXRGXGXXGPPPXPPP 522
G PP PG GPPP PPP
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPP 748
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 448 PGXKNPPXPGXRGXGXXGPPPXPPP 522
PG PP P G G PP PPP
Sbjct: 765 PGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRGXGXXGPPPXPPP 522
P G P PP P G PPP PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRGXGXXGPPPXPPP 522
PG + G PP PG GPPP PPP
Sbjct: 315 PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 451 GXKNPPXPGXRGXGXXGPPPXPPP 522
G PP P G GPPP PPP
Sbjct: 350 GCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 451 GXKNPPXPGXRGXGXXGPPPXPPP 522
G PP PG GPPP PPP
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPPPP 331
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 448 PGXKNPPXPGXRGXGXXGPPPXPPP 522
PG PP P G G PP PPP
Sbjct: 348 PGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRGXGXXGPPPXPPP 522
P G P PP P G PPP PPP
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
>CU457737-9|CAM36330.1| 281|Caenorhabditis elegans Hypothetical
protein C52D10.13 protein.
Length = 281
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/82 (25%), Positives = 24/82 (29%)
Frame = +3
Query: 564 PPPPGGEXGXPXXXGXNRXXKNXXXRAQXGPAXTEXXXGXXGXPQKXPPXPRXTXXKTAR 743
P P GE G P G N GP + G G P P R
Sbjct: 150 PKGPDGESGAPGEPGPAGRPGNKGAPGPAGPVGADGEPGELGAP-GAPGVQRTVASPVGE 208
Query: 744 PPVXGGXNPHGEXKKKXKAXLP 809
P G P GE + + P
Sbjct: 209 PGEPGEQGPKGEAGQDGRPGQP 230
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2
Query: 770 GVXXPXXGGAGGFXXGXPGGGGAFLXXXPPXG 675
G P GG GGF PGG GA+ PP G
Sbjct: 421 GSYGPPQGGPGGFGPPPPGGPGAY--GPPPTG 450
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRGXGXXGPPPXPP 519
P GG +PG PP G G G PPP P
Sbjct: 412 PPPGGPGAPGSYGPPQGGPGGFGP--PPPGGP 441
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -2
Query: 749 GGAGGFXXGXPGGGGAFLXXXPPXGXXFGXXGP 651
GG GG+ PGG GA PP G G GP
Sbjct: 404 GGPGGYGPPPPGGPGAPGSYGPPQGGP-GGFGP 435
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRGXGXXGPPP--XPPP*TP 531
P GG PG PP PG G G GPPP PP P
Sbjct: 425 PPQGG---PGGFGPPPPG--GPGAYGPPPTGFPPVGAP 457
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 463 PPXPGXRGXGXXGPPPXPPP 522
PP P G G PPP PPP
Sbjct: 41 PPPPPPCGGGYEAPPPPPPP 60
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 424 PGXGGXX-SPGXK-NPPXPGXRGXGXXGPPPXPP 519
PG G +PG NP PG G GPPP PP
Sbjct: 119 PGRDGRPGAPGRPGNPGPPGRDGALLPGPPPKPP 152
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRG-XGXXGPPPXPPP 522
PG G PG PP P G G G PP PPP
Sbjct: 308 PGPPGM--PGMPPPPPPSRFGPPGMGGMPPPPPP 339
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = +1
Query: 406 PLXXXXPGXGGXXSPGXKNPPXPGXRGXGXXGPPPXPPP*TP 531
P PG GG P P PG R G G PP PPP P
Sbjct: 322 PSRFGPPGMGGMPPP-----PPPGMRYPG--GMPPPPPPRYP 356
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 785 FXFPVGVXXPXXGGAGGFXXGXPGGGGAFLXXXPPXGXXFGXXG 654
F FP GG GG G GGGG P G G G
Sbjct: 20 FLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGG 63
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 785 FXFPVGVXXPXXGGAGGFXXGXPGGGGAFLXXXPPXGXXFGXXG 654
F FP GG GG G GGGG P G G G
Sbjct: 20 FLFPSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGG 63
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 29.5 bits (63), Expect = 3.7
Identities = 29/108 (26%), Positives = 31/108 (28%)
Frame = +3
Query: 426 GGGGXGFPXXKKPPXPRGKGXXXXGAXXXXXXXXXXXXXXXXXXXXPPPPGGEXGXPXXX 605
G G G P PP PRG PP P G G
Sbjct: 209 GPGRQGMPGPTGPPGPRGPPGETGDEGEGGPDGIPMEKKSPPGPRGPPGPAGPDGPQGPE 268
Query: 606 GXNRXXKNXXXRAQXGPAXTEXXXGXXGXPQKXPPXPRXTXXKTARPP 749
G R K + GP E G G P K P P + AR P
Sbjct: 269 G--RSGK----QGPPGPTGQEGEEGVIGEPGK-PGEPGKSGAAGARGP 309
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRG-XGXXGPPPXPPP 522
PG G PG PP P G G G PP PPP
Sbjct: 318 PGPPGM--PGMPPPPPPSRFGPPGMGGMPPPPPP 349
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = +1
Query: 406 PLXXXXPGXGGXXSPGXKNPPXPGXRGXGXXGPPPXPPP*TP 531
P PG GG P P PG R G G PP PPP P
Sbjct: 332 PSRFGPPGMGGMPPP-----PPPGMRYPG--GMPPPPPPRYP 366
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +1
Query: 427 GXGGXXSPGXKN--PPXPGXRGXGXXGPPPXPPP 522
G GG +P PP P G PPP PPP
Sbjct: 27 GGGGGCAPAAPACAPPPPPMCGCAPPPPPPPPPP 60
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = +1
Query: 427 GXGGXXSPGXKNPPXPGXRGXGXXGPPPXPPP*TP 531
G GG S PP PG G G PPP PPP P
Sbjct: 652 GSGGGSSMPMPVPP-PG--GLGGFMPPPPPPPPMP 683
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +1
Query: 403 LPLXXXXPGX-GGXXSPGXKNPPXPGXRGXGXXGPPPXPP 519
+P+ PG GG P PP PG PP PP
Sbjct: 659 MPMPVPPPGGLGGFMPPPPPPPPMPGDLSSLLAAAPPPPP 698
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/35 (48%), Positives = 17/35 (48%)
Frame = +1
Query: 427 GXGGXXSPGXKNPPXPGXRGXGXXGPPPXPPP*TP 531
G GG S PP PG G G PPP PPP P
Sbjct: 652 GSGGGSSMPMPVPP-PG--GLGGFMPPPPPPPPMP 683
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = +1
Query: 403 LPLXXXXPGX-GGXXSPGXKNPPXPGXRGXGXXGPPPXPP 519
+P+ PG GG P PP PG PP PP
Sbjct: 659 MPMPVPPPGGLGGFMPPPPPPPPMPGDLSSLLAAAPPPPP 698
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 463 PPXPGXRGXGXXGPPPXPPP*TP 531
PP P G PPP PPP P
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVP 147
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +1
Query: 433 GGXXSPGXKNPPXPGXRGXGXXGP--PPXPP 519
GG PG P G G G GP PP PP
Sbjct: 616 GGPGGPGGGGGPPRGPGGGGGGGPTGPPAPP 646
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +1
Query: 433 GGXXSPGXKNPPXPGXRGXGXXGP--PPXPP 519
GG PG P G G G GP PP PP
Sbjct: 616 GGPGGPGGGGGPPRGPGGGGGGGPTGPPAPP 646
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = +1
Query: 424 PGXGGXXSPGXKNPPXPGXRGXGXXG--PPPXPPP*TP 531
PG GG PG P PG G G G P P P P
Sbjct: 287 PGQGGPGMPGSFPPGAPGPGGPGMPGSFAPGAPGPGGP 324
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 500 PXXPXPLXPGXGGFFXPGEXXPPXPGXXXXXG 405
P P P PG G F PG P PG G
Sbjct: 300 PGAPGPGGPGMPGSFAPGAPGPGGPGGYPSGG 331
>U52002-6|AAB37732.1| 142|Caenorhabditis elegans Hypothetical
protein F08B4.7 protein.
Length = 142
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 406 PLXXXXPGXGGXXSPGXKNPPXPGXRGXGXXGPPPXPP 519
P PG G +PG PP PG G GPP PP
Sbjct: 96 PRPFPGPGVGFPGAPGM--PPFPGG-PMGMAGPPGMPP 130
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +3
Query: 564 PPPPGGEXGXPXXXGXNRXXKNXXXRAQXGPAXTEXXXGXXGXPQKXPPXPRXTXXKTAR 743
PP P G G P G GP T G G P P P
Sbjct: 175 PPGPPGPEGAPGEDGNTPSRGGVGEAGPPGPPGTSGNPGTDGAPGN-PGAPGQVTETPGT 233
Query: 744 PPVXGGXNPHG 776
P G P G
Sbjct: 234 PGPAGAAGPPG 244
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/69 (24%), Positives = 20/69 (28%)
Frame = +3
Query: 564 PPPPGGEXGXPXXXGXNRXXKNXXXRAQXGPAXTEXXXGXXGXPQKXPPXPRXTXXKTAR 743
PPPPG G P + + GP + G P P P
Sbjct: 693 PPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMP 752
Query: 744 PPVXGGXNP 770
PP G P
Sbjct: 753 PPPHGQYQP 761
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/69 (24%), Positives = 20/69 (28%)
Frame = +3
Query: 564 PPPPGGEXGXPXXXGXNRXXKNXXXRAQXGPAXTEXXXGXXGXPQKXPPXPRXTXXKTAR 743
PPPPG G P + + GP + G P P P
Sbjct: 693 PPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMP 752
Query: 744 PPVXGGXNP 770
PP G P
Sbjct: 753 PPPHGQYQP 761
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -2
Query: 749 GGAGGFXXGXPGGGGAFLXXXPPXGXXFGXXG 654
GG GGF G GG G F P G G G
Sbjct: 268 GGRGGFRGGFRGGRGGFGGPGGPMGGRGGMGG 299
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -2
Query: 749 GGAGGFXXGXPGGGGAFLXXXPPXGXXFGXXG 654
GG GGF G GG G F P G G G
Sbjct: 268 GGRGGFRGGFRGGRGGFGGPGGPMGGRGGMGG 299
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,855,831
Number of Sequences: 27780
Number of extensions: 165462
Number of successful extensions: 1967
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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