Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A14
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    28   1.5  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   6.2  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.2  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -1

Query: 737 GXRHASRREKGGQV---SGKRQGRNRRAHEGASR 645
           G +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 93  GSKRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +3

Query: 645 PGSSLVRSPVPTLPLTGYLSAFLPSGSVAXSS*LTL*VSQFGVGRXLQAGLCART 809
           P SS   +P PT   TGY SAF  S  ++ +S      SQ G+G   Q    A++
Sbjct: 377 PTSSSAFTPQPTTFNTGYTSAFGMSSGLSNTS------SQAGLGLTSQQPTAAKS 425


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +3

Query: 570 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 698
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 811 GVRAHSPAWSXRPTPN*DTYSVSYEEXATLPEGRK 707
           G R ++PA    P P  D  S++ E+   L E RK
Sbjct: 789 GSRYYAPAPQAEPEPKIDETSLTEEQKIQLEEARK 823


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,421
Number of Sequences: 5004
Number of extensions: 62367
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)