Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A09
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0923 + 7129891-7130211,7130610-7131068                           30   2.7  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.3  
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    28   8.3  

>06_01_0923 + 7129891-7130211,7130610-7131068
          Length = 259

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 831 GGGAYGKTPXTRXFTVPXXCWPFAHMFFP-ALSPDSVD 721
           GGG  GK P  R +       P +   FP  +SPD VD
Sbjct: 11  GGGGQGKLPRKRFYRARAHSNPLSDSHFPIPISPDEVD 48


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +3

Query: 636 PLPRSLTRCARSF--GCGERYQLTQRRXYGYPQNQGITQ--ERTCEQKAS 773
           P PRS  RC      GCG R Q TQ R    P N  IT   E TC   ++
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQ-RCEADPSNYDITYYGEHTCRDPST 197


>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 78   ILQTGCHKVAEEQKLEESDGL 140
            + Q+GCH   EE ++E  DGL
Sbjct: 1872 LYQSGCHTALEELRIESCDGL 1892


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,156,302
Number of Sequences: 37544
Number of extensions: 281855
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)