Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A08
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    31   0.28 
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.5  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    28   2.0  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   2.6  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   8.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   8.1  

>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 112

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 609 KNKLLEMLNQQAEEKGKRAERLENLDQDIKMFEEEL 716
           + K+ EM+NQ+ E K ++ ++ +  D D  +FEE++
Sbjct: 74  EEKIHEMINQKRETKKRKRKQKKKNDDDYGVFEEDM 109


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +3

Query: 573 AKTDEVKALESRKNKLLEMLNQQAEEKGKRAERLENLDQDIKMFEEEL 716
           ++TD +  +ES K  L E+   +AEE       + +LD++I++ +E+L
Sbjct: 114 SQTDILSQIESTKASLAEV--HKAEEISNLKTSITHLDEEIQILQEKL 159


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -3

Query: 625 SNSLFLRLSKAFTSSV-FANNSSSN-GAISLNLPSLKSIKLKSNR 497
           S+ L  RLSK   SS+  +NNSSSN G   L  P+L  ++  SN+
Sbjct: 57  SSGLSSRLSKPSLSSINNSNNSSSNTGGNVLPNPALTPVRNMSNK 101


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 558 EEELFAKTDEVKALESRKNKLLEMLNQQAEEKGKRAERLENLDQDIKMFEEE 713
           +EE   K +E +    ++ K  E+  Q+ EEK K+ ER + L +  +  + E
Sbjct: 634 QEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADRE 685


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
 Frame = +3

Query: 546 IAPFEEELFAKTDEVKALESRKN-------KLLEMLNQQAEEKGKRAE----RLENLDQD 692
           I+ F+EE+   TDE+  L  R N       +L + L    EE  K  E    +  NL + 
Sbjct: 594 ISLFKEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQ 653

Query: 693 IKMFEEEL 716
           +KM E E+
Sbjct: 654 LKMTEAEV 661


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = +3

Query: 549  APFEEELFAKTDEVKALESRKNKLLEMLNQQ-------AEEKGKRAERLENLDQDI 695
            A F ++L  K+D ++ L + KN+L+  L Q         EE+   A RL ++ + +
Sbjct: 1133 ANFVDDLKEKSDALEQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMKKSL 1188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,252
Number of Sequences: 5004
Number of extensions: 50726
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)