Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A07
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.27 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
 Frame = -1

Query: 645 KKIFFXGXPPXXGXKXXP-PGGGXXXPPPPPPXGGG-----XXXGGGGGGPXKXXPPPP 487
           +K+     PP       P P       PPP P  GG        G  G GP    PPPP
Sbjct: 725 QKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 594 PPGGGXXXPPPPPPXGGGXXXGG 526
           PPG     PPPPPP       GG
Sbjct: 767 PPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = -1

Query: 570 PPPPPP--XGGGXXXGGGGGGPXKXXPPPP 487
           PPPPPP     G    G G       PPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
 Frame = -1

Query: 570 PPPPPPXG----GGXXXGGGGGGPXKXXPPPP 487
           PPPPPP      G    G G        PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -1

Query: 585 GGXXXPPPPPPXGGGXXXGGGGGGPXKXXPPPPGGG 478
           GG    PPP P G G   G GG G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 588 GGGXXXPPPPPPXGGGXXXGGGGG 517
           GGG   PPP P   GG    GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEG 217


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = -1

Query: 594 PPGGGXXXPPPPPPXGGGXXXGGGGGGPXKXXPPPPGG 481
           PPG     PPPPPP G           P +  PPPP G
Sbjct: 5   PPGN---PPPPPPPPGFEP--------PSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,769
Number of Sequences: 5004
Number of extensions: 13926
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)