Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_A06
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 241 1e-64
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 222 6e-59
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz... 34 0.033
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 31 0.17
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 30 0.53
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 28 1.6
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 27 4.9
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 6.5
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 6.5
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 8.6
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 241 bits (590), Expect = 1e-64
Identities = 118/190 (62%), Positives = 144/190 (75%), Gaps = 1/190 (0%)
Frame = +3
Query: 180 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEFLELRDNIKSEYHGK 359
M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ E LE+RD K+++ GK
Sbjct: 1 MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60
Query: 360 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 539
GVL A+ N+N +IAP + KANL+VT Q+ DE +LKLDGTENKSKLGANAILGVS+
Sbjct: 61 GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120
Query: 540 XXXXXXNVPLYKHLADLAG-NNDIVLPVPAFNVINGGSHAGNKLAMQEFMISPTGASTFS 716
+PL+K++A+ G VLPVP+FNV+NGGSHAG LA QEFMI PTGA +FS
Sbjct: 121 AGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTGAPSFS 180
Query: 717 EAMRMGSEVY 746
EAMR G+E Y
Sbjct: 181 EAMRWGAETY 190
Score = 36.7 bits (81), Expect = 0.005
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +2
Query: 731 GFRSVHHLKKIIKEKFGLDSTAVGDEGGSHQTXKTTRMPFIWIXDAXXKAX*CWXEXKLG 910
G + H LK I K+++G + VGDEGG +T + I +A KA + K+G
Sbjct: 186 GAETYHTLKSIAKKRYGSSAGNVGDEGGIAPDLQTPQEALDLIVEAINKAG-YEGKIKIG 244
Query: 911 MDV 919
+DV
Sbjct: 245 LDV 247
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 222 bits (542), Expect = 6e-59
Identities = 107/188 (56%), Positives = 137/188 (72%), Gaps = 1/188 (0%)
Frame = +3
Query: 186 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEFLELRDNIKSEYHGKGV 365
I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG E ELRDN K+++ GKGV
Sbjct: 4 IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63
Query: 366 LTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXX 545
A+ N+N +I P L K+++++T QR IDE M+KLDGT +KSKLGAN+I+GVS+
Sbjct: 64 TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123
Query: 546 XXXXNVPLYKHLADLAGNNDI-VLPVPAFNVINGGSHAGNKLAMQEFMISPTGASTFSEA 722
+PLY+++ LAG+ +PVP+FNV+NGG HAG LA QEFMI P A TFSE
Sbjct: 124 AAFLKIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKAPTFSEG 183
Query: 723 MRMGSEVY 746
+R GSEVY
Sbjct: 184 LRWGSEVY 191
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 731 GFRSVHHLKKIIKEKFGLDSTAVGDEGGSHQTXKTTRMPFIWIXDAXXKAX*CWXEXKLG 910
G H LK + K+K+G + VGDEGG T + +A +A + K+G
Sbjct: 187 GSEVYHTLKALAKKKYGASAGNVGDEGGIAPDLTTAEEALDLVNEAIKEAG-YDGKVKIG 245
Query: 911 MDV 919
DV
Sbjct: 246 FDV 248
>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.033
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 733 PILMASLKVDAPVGEIMNSCMASLFPACDPPLITLKAGTGRTISL 599
PI+ S + + +GE +N + LFP+CD LI G TI L
Sbjct: 192 PIIQTSAPLGSSLGEFLNKRLPDLFPSCDKFLIVKPVIHGITIFL 236
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 31.5 bits (68), Expect = 0.17
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +3
Query: 216 DSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEFLELRDNIKSEYHGKGVLTAIKNINEL 395
D +G +VD ++A +ST FLE R N + E V TAI + E
Sbjct: 140 DEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDD-AVHTAILALKET 198
Query: 396 IAPELTKANLEV 431
ELT+ N+E+
Sbjct: 199 FEGELTEDNIEI 210
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 29.9 bits (64), Expect = 0.53
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 843 ILVVLXVWCEPPSSPTAVESNPNFSLMIFFKWCTLLNPS 727
I L WC+PPSS + + +F +++ F NP+
Sbjct: 1506 IQYALLNWCQPPSSISLASIDESFMIVLLFDLLQQFNPA 1544
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 81 NQILIF*PNPXCKVQFC*IRITLNLRKSSSVLKMVIKSIKARQIFDS 221
NQI ++ P C V+ I I N+ +S V K + +K +FDS
Sbjct: 241 NQIYLYFSYPSCLVRVYSIGIIYNIYQSGFVNKKMESVVKGISLFDS 287
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 4.9
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = +3
Query: 153 LRKSSSVLKMVIKSIKARQIFDSRGNPTV-EVDLVTELGLFRAAVPSGASTGVHEFLELR 329
++ +V+K I SIK ++ + +G TV + D+ + G A G T + +
Sbjct: 171 MKGEMAVMKNDIASIKG-EMAEMKGEMTVMKNDIASIKG--EMAEMKGEMTIMKSDI--- 224
Query: 330 DNIKSEY-HGKGVLTAIKNINELIAPELTKANLEVTQQRE-IDELMLKLDGTENKSK 494
D++K E KG +T +KN + + E T EVT ++ I +L K+D + +++
Sbjct: 225 DSVKGEMAEMKGEMTIMKNDIDSVKGETTTLKGEVTAMKDSISQLDRKIDLLDQRTE 281
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 341 LDVISQF--KKFMNTSGGTRGYSCPEQAKLCYQINF 240
LDV ++F K+F + T+ YS A++C Q N+
Sbjct: 621 LDVFAEFDRKRFFDFLVNTQCYSLDHAAQICKQYNY 656
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 488 FVLSAIQLKHEFINLSLLGYFKVGFG 411
F +S+I+ KH++IN+ Y +G G
Sbjct: 113 FSISSIKTKHDYINIIKKHYVSLGVG 138
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 8.6
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 524 PSCC*GWCCQEK 559
PSCC G CC+E+
Sbjct: 490 PSCCGGHCCKEE 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,419,174
Number of Sequences: 5004
Number of extensions: 65985
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -