Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_A05
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 35 0.10
02_05_1092 - 34049640-34049934,34050013-34050147,34050229-340503... 33 0.23
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 30 2.9
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 30 2.9
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 29 3.8
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 3.8
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884... 29 3.8
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 29 5.0
08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,440... 28 8.8
01_06_0380 - 28874699-28874732,28875077-28876116 28 8.8
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 34.7 bits (76), Expect = 0.10
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = +1
Query: 100 DASHLNIPSNPI-IETKSTIIKPESPKRNENSPLADTSNKKRIIAEVKPMRPSYSDVLAK 276
D N PI IET++ E P AEV P S +AK
Sbjct: 379 DGRMRNPDEKPIFIETEAAAPPVEQEPIQSKMPAKQAKEAPAPQAEVSPKDESRVKAIAK 438
Query: 277 NTKNVNTIDTNRKIKSQTPETKPTNIKTNAKHEKPVYSGKQYEDNKPKTDKKQ 435
+K +++D + ++++P+ KP + + K + ++ E N+ ++K+
Sbjct: 439 PSKAKSSLDADDDYEAESPKEKPKPKEVDVAKLKEIKRQEEMEKNRLALERKK 491
>02_05_1092 -
34049640-34049934,34050013-34050147,34050229-34050305,
34050541-34050624,34050699-34050849,34050944-34051060,
34051162-34051219,34051412-34051502,34051601-34051648,
34051724-34051792,34051881-34051904,34052125-34052233,
34052338-34052375,34052524-34052672,34052765-34052780
Length = 486
Score = 33.5 bits (73), Expect = 0.23
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +1
Query: 226 IAEVKPMRPSYSDVLAKNTKNVNTIDTNRKIKSQTPETKPTNIKTNAKHEKPVYSGKQYE 405
+ E++ PSY+ N TNR+ T TN ++ Y+G ++
Sbjct: 177 LVEIQSAVPSYTSCHEPPQDKTNKRCTNRRKSESCEVTMDTNTVQHSCRPHVEYNGSSHD 236
Query: 406 DNKPKTDKKQTTTLSSG 456
D+ KT ++++ L+ G
Sbjct: 237 DDPRKTRRRRSARLNPG 253
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Frame = +1
Query: 112 LNIPSNPIIETKSTIIKPESPKRNENSPLADTSNKKRIIAEVKPMRPSYSDVLAKNTKNV 291
+NIPSN + ++ P + N L I+E + K KN+
Sbjct: 323 INIPSNSQSSSSQSVSPMFVPTIDPNIKLGKQKAFGPTISEELVSELALKLNNLKVNKNI 382
Query: 292 NTIDTNRKIKSQTPETKPTNIKTNAK--HEKPVYSGKQYED 408
N I N K KP+ + + + + +P Y+ Q+E+
Sbjct: 383 NEISDNEKYDMVNKIFKPSTLTSTTRNYYPRPTYANLQFEE 423
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Frame = +1
Query: 112 LNIPSNPIIETKSTIIKPESPKRNENSPLADTSNKKRIIAEVKPMRPSYSDVLAKNTKNV 291
+NIPSN + ++ P + N L I+E + + K KN+
Sbjct: 323 INIPSNSQSSSSQSVSPMFVPTIDPNIKLGKQKAFGPAISEELVNKLALKLNNLKVNKNI 382
Query: 292 NTIDTNRKIKSQTPETKPTNIKTNAK--HEKPVYSGKQYED 408
N I N K KP+ + + + + +P Y+ Q+E+
Sbjct: 383 NEISDNEKYDMVNKIFKPSTLTSTTRNYYPRPTYADLQFEE 423
>05_06_0046 -
25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 154 IIKPESPKRNENSPLADTSNKKRIIAEVKPMRPSYS 261
I+KPE PK N N+ D K + +A +P PS S
Sbjct: 173 IMKPEEPKNNLNN---DVEGKNKAVASGQPGSPSLS 205
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 2/92 (2%)
Frame = +1
Query: 121 PSNPIIETKSTIIKPESPKRNENSPLAD--TSNKKRIIAEVKPMRPSYSDVLAKNTKNVN 294
PS+PI S P SP + SP+ + +S P PSYS + + + +
Sbjct: 1657 PSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYS--YSPTSPSYS 1714
Query: 295 TIDTNRKIKSQTPETKPTNIKTNAKHEKPVYS 390
+ +P PT+ N P YS
Sbjct: 1715 PTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYS 1746
>01_01_1116 +
8839946-8840048,8840142-8842064,8842192-8842307,
8843340-8843763,8845187-8845452
Length = 943
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Frame = +1
Query: 112 LNIPSNPIIETKSTIIKPESPKRNENSPLADTSNKKRIIAEVKPMRPSYSDVLAKNTKNV 291
+NIPSN + ++ P + N L I+E + K KN+
Sbjct: 472 INIPSNSQSSSSQSVSPMFVPTIDPNIKLGKQKAFGPAISEELVSELALKLNNLKVNKNI 531
Query: 292 NTIDTNRKIKSQTPETKPTNIKTNAK--HEKPVYSGKQYED 408
N I N K KP+ + + + + +P Y+ Q+E+
Sbjct: 532 NEISDNEKYDMVNKIFKPSTLTSTTRNYYPRPTYADLQFEE 572
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 29.1 bits (62), Expect = 5.0
Identities = 23/70 (32%), Positives = 29/70 (41%)
Frame = +1
Query: 250 PSYSDVLAKNTKNVNTIDTNRKIKSQTPETKPTNIKTNAKHEKPVYSGKQYEDNKPKTDK 429
PS V++ KNV D N K PE K K N K +NKP DK
Sbjct: 168 PSSKKVVS-GQKNVGKSDANVDSKKAAPENKAPENKANPTPAK---------NNKPSGDK 217
Query: 430 KQTTTLSSGQ 459
K+ S+G+
Sbjct: 218 KKAQEKSAGK 227
>08_01_0506 -
4400776-4400937,4401164-4401253,4401334-4401546,
4401725-4401817,4402357-4402551,4402643-4402735,
4403554-4403649,4404186-4404633,4405078-4405745,
4406822-4406884,4408650-4408847,4409265-4409982,
4410447-4410580
Length = 1056
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 334 ETKPTNIKTNAKHEKPVYSGKQYEDNKPKTDKKQTT 441
+ KP N+ +K E P + E + PK K +TT
Sbjct: 171 DIKPLNLLDGSKEEIPWHDSVTVESSLPKVSKSETT 206
>01_06_0380 - 28874699-28874732,28875077-28876116
Length = 357
Score = 28.3 bits (60), Expect = 8.8
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Frame = +1
Query: 103 ASHLNIPSNPIIETKSTIIKPESPKRNENSPLADTSNKKRIIAE-------VKPMRPSYS 261
A+ +P+ + E + T+ E+P ++ + +A+ ++ +AE + SY+
Sbjct: 47 AAEKTLPNGSVEEDEVTVTAAENPAKSYAAVVAEKTSPNGSVAEDEVTVTAAENRAKSYA 106
Query: 262 DVLAKNTKNVNTIDTNRKIKSQTPETKPTNIKTNAKHEKPVYSGKQYED 408
DV A+ T ++ + S T P EK V G ED
Sbjct: 107 DVAAEKTYPNGNVEEDE--VSVTAAVNPAKSYATVAAEKTVPDGSVAED 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,514,360
Number of Sequences: 37544
Number of extensions: 321531
Number of successful extensions: 881
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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