Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A05
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.31 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +1

Query: 64  PLLARTILLNHPDASHLNIPSNPIIETKSTIIKPESPK--RNENSPLADTSNKKRI-IAE 234
           PLLA  +      AS  +IP     E K+  I+PE+ K    E  P  D S K+++ +A 
Sbjct: 113 PLLAEKLAAPSSQASPTSIPYATRAEIKTESIQPETTKVDTREVQP-HDASEKEQLGLAS 171

Query: 235 VK 240
           VK
Sbjct: 172 VK 173


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 456 AVSLVTTTLMTMKSNNAPTKKLKINAIHY 542
           A+  +T  LMT++ +  PT+K  + +++Y
Sbjct: 251 ALLSMTVFLMTIRESLPPTEKTPLISLYY 279


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 82   ILLNHPDASHLNIPSNPIIETKSTIIKPESPKRNENSPLAD 204
            + +NH     + +P N +I T +T+    S   +   PL++
Sbjct: 1294 LTVNHAYRDAVTVPGNNLIATNTTVSSGSS--EDHRRPLSE 1332


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 150 AFSFNNRIRWYI*MGSIW 97
           AF  NN ++W +  G  W
Sbjct: 276 AFRGNNNLKWLVNWGEQW 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,551
Number of Sequences: 438
Number of extensions: 4022
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)