Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A03
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    61   2e-10
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    27   2.7  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    27   4.7  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   8.2  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    26   8.2  

>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 27/116 (23%), Positives = 64/116 (55%)
 Frame = +2

Query: 179 LDEIVSSEDLQKFERVFHEQLHQGNVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNS 358
           +D I+S ++  + +  +  +  Q  ++ + +F  AW LVRS     +++G+ L   ++  
Sbjct: 15  IDSIISVDEFLQIKEQYDAE--QPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKD 72

Query: 359 HPEGKRDYLFYLAIGNARIKEYNKALHYVKSFLEIEPANQQVLALERQINKRMEKE 526
            PE + + L+Y+A+ + ++K+Y ++  Y+   L  +P + + L L+ ++   + KE
Sbjct: 73  SPERRLECLYYIALSHYKLKQYEESRRYLNMLLSKDPNSPEALKLKNRLYDAVTKE 128


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 353 NSHPEGKRDYLF--YLAIGNARIKEYNKALHYVKSFLEIEPANQ 478
           NS+P    ++ F  Y+ +   R +EYNKA+  +  +L + P NQ
Sbjct: 113 NSYPNRNAEHFFPAYIMLLIQR-QEYNKAMKLLDEYLLLPPYNQ 155


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 105 IFLFVNVKYLIKVIIYSN-RL*WKTY*TRLFHRKICK 212
           ++L VNV+  IK I+Y N  L W  +   + + K+C+
Sbjct: 14  LYLMVNVQCRIKEIMYWNICLYWDVFSKLIIYNKVCQ 50


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 136 SKLSFIVTGYNGRRIRRDCFIGRFAKIRKGLS*TIAP 246
           SKLSFI + +   RI +D F    A IR  L  ++ P
Sbjct: 865 SKLSFIGSNHTRYRIDKDEFSSGIASIRGTLMSSVLP 901


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 194 SSEDLQKFERVFHEQLHQGNVSHKAQFE 277
           +  +++  E++ HEQL++ N   K +FE
Sbjct: 162 NQREVESLEQLVHEQLNKLNTESKMEFE 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,573
Number of Sequences: 5004
Number of extensions: 61642
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)