Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A03
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39853-3|AAT92078.1|  151|Caenorhabditis elegans S. cerevisiae f...    71   8e-13
U39853-4|AAK39224.1|  138|Caenorhabditis elegans S. cerevisiae f...    69   6e-12
U39999-11|AAA81109.1|  143|Caenorhabditis elegans S. cerevisiae ...    64   1e-10
Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical pr...    36   0.039
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U39853-3|AAT92078.1|  151|Caenorhabditis elegans S. cerevisiae
           fis1-related protein2, isoform b protein.
          Length = 151

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
 Frame = +2

Query: 176 VLDEIVSSEDLQKFERVFHEQLHQGNVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFN 355
           +L+E  +   L      +  Q  +G+ S  + F +A  ++ SK   D+++GI+ L++L  
Sbjct: 6   ILEERTNPAVLMNAREQYMRQCARGDPSAASTFAFAHAMIGSKNKLDVKEGIVCLEKLLR 65

Query: 356 SHPE--GKRDYLFYLAIGNARIKEYNKALHYVKSFLEIEPANQQVLALERQINKRM 517
              +   KR+Y++YLA+ +ARIK+Y+ AL Y+   L+ E  NQQ   L+  I   M
Sbjct: 66  DDEDRTSKRNYVYYLAVAHARIKQYDLALGYIDVLLDAEGDNQQAKTLKESIKSAM 121


>U39853-4|AAK39224.1|  138|Caenorhabditis elegans S. cerevisiae
           fis1-related protein2, isoform a protein.
          Length = 138

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
 Frame = +2

Query: 227 FHEQLHQGNVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNSHPE--GKRDYLFYLAI 400
           +  Q  +G+ S  + F +A  ++ SK   D+++GI+ L++L     +   KR+Y++YLA+
Sbjct: 10  YMRQCARGDPSAASTFAFAHAMIGSKNKLDVKEGIVCLEKLLRDDEDRTSKRNYVYYLAV 69

Query: 401 GNARIKEYNKALHYVKSFLEIEPANQQVLALERQINKRM 517
            +ARIK+Y+ AL Y+   L+ E  NQQ   L+  I   M
Sbjct: 70  AHARIKQYDLALGYIDVLLDAEGDNQQAKTLKESIKSAM 108


>U39999-11|AAA81109.1|  143|Caenorhabditis elegans S. cerevisiae
           fis1-related protein1 protein.
          Length = 143

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 32/94 (34%), Positives = 59/94 (62%), Gaps = 2/94 (2%)
 Frame = +2

Query: 251 NVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFN--SHPEGKRDYLFYLAIGNARIKEY 424
           +VS + Q   A  LV S+   +I++GI +L+++ +  +H E  R  + YLA+ +AR+K Y
Sbjct: 23  SVSRENQISLAIVLVGSEDRREIKEGIEILEDVVSDTAHSEDSRVCVHYLALAHARLKNY 82

Query: 425 NKALHYVKSFLEIEPANQQVLALERQINKRMEKE 526
           +K+++ + + L  EP+N Q   L R + K+M++E
Sbjct: 83  DKSINLLNALLRTEPSNMQATELRRAVEKKMKRE 116


>Z68134-1|CAA92226.2|  492|Caenorhabditis elegans Hypothetical
           protein T27A8.1 protein.
          Length = 492

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = +2

Query: 197 SEDLQKFERVFHEQLHQGNVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNSHPEGKR 376
           ++ +    R F    H  +     Q    W LV S+YP + RK I   K + N H     
Sbjct: 65  TDHIHNLHRKFPNLTHIYSAGQSVQGRELWVLVVSRYPIEHRKLIPEFKYVANMHGNEVT 124

Query: 377 DYLFYLAIGNARIKEYNKAL 436
             +F +++ +  ++ YN  L
Sbjct: 125 GRVFLVSLAHTLLENYNSNL 144


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +1

Query: 520 KRRFNWNGGGRRSCPCP----WRARGTRNRTCFKEIAISLANECCSRCSL 657
           KR  N         PCP    W  R +R+  C  +  + +  +CC  C++
Sbjct: 81  KRPLNITSDPPADEPCPDESRWSKRCSRDEDCTHQEELCIEGKCCKTCAM 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,511,797
Number of Sequences: 27780
Number of extensions: 331140
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)