Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_A02
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.082
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.77 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.1  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   7.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.7 bits (71), Expect = 0.082
 Identities = 19/74 (25%), Positives = 20/74 (27%)
 Frame = +2

Query: 743 PPAPXXKXNSPXXXPXRPPPPTXXXXXXPLXXPXXPPHPPPXXPXPXXXXPXXXAXXXPX 922
           PP P  +   P   P RP  P       P      PP P    P      P       P 
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 923 XXHXXRPXXPKXAP 964
                 P  PK  P
Sbjct: 190 LPSAVPPMPPKVPP 203



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/61 (26%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
 Frame = +2

Query: 743 PPAPXXKXNSPXXXPX--RPPPPTXXXXXXPLXXPXXPPHPPPXXPXPXXXXPXXXAXXX 916
           PP P      P   P   +P  P       P      PP PP   P P    P       
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSR 217

Query: 917 P 919
           P
Sbjct: 218 P 218


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = -1

Query: 894 GXXXXGXGXXGGGXGGXLGXXXGXXXXXXVGGGGRXGXXXGEXIXFXGAGG 742
           G    G G  GGG GG  G   G        GGG  G   G      G GG
Sbjct: 217 GHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
 Frame = +2

Query: 743 PPAPXXKXNSPXXXPXRPPPPTXXXXXXPLXXP----XXPPHPPPXXP 874
           PPA      +P   P  PP P       P   P      PP PPP  P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/45 (28%), Positives = 13/45 (28%)
 Frame = +2

Query: 785 PXRPPPPTXXXXXXPLXXPXXPPHPPPXXPXPXXXXPXXXAXXXP 919
           P  PPP        P   P  PP P    P P    P       P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
 Frame = +2

Query: 743  PPAPXXKXNSPXXXPXR--PPPPTXXXXXXPLXXPXX--PPHPPPXXPXPXXXXP 895
            PP P      P   P    PP PT      P+  P    PP P P    P    P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
 Frame = +2

Query: 743  PPAPXXKXNSPXXXPX--RPPPPTXXXXXXPLXXPXX--PPHPPPXXPXP 880
            PP P      P   P    PP P       P+  P    PP PPP    P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
 Frame = +2

Query: 743  PPAPXXKXNSPXXXP--XRPPPPTXXXXXXPLXXP-XXPPHPPPXXPXPXXXXPXXXAXX 913
            PP P      P   P    PP P       P+  P   PP P P    P    P   A  
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238

Query: 914  XP 919
             P
Sbjct: 1239 VP 1240


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 785 PXRPPPPTXXXXXXPLXXPXXPPHPPP 865
           P  PPPP       P   P  PP PPP
Sbjct: 6   PGNPPPPPPPPGFEP---PSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
 Frame = +2

Query: 743 PPA--PXXKXNSPXXXPXRPPPPTXXXXXXPLXX--PXXPPHPPPXXPXPXXXXPXXXA 907
           PP+  P    + P   P  PP P       PL    P  PP PP     P    P   A
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
 Frame = +2

Query: 743 PPAPXXKXNSPXXXPXRPPPPTXXXXXXP-LXXPXXPPHPPP 865
           PP P     +    P  PP P       P +     PP PPP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 18/74 (24%), Positives = 19/74 (25%)
 Frame = +2

Query: 743 PPAPXXKXNSPXXXPXRPPPPTXXXXXXPLXXPXXPPHPPPXXPXPXXXXPXXXAXXXPX 922
           P  P     S    P  P PP+      P   P  PP  P   P      P         
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460

Query: 923 XXHXXRPXXPKXAP 964
                 P  P  AP
Sbjct: 461 AGMPAAPPLPPAAP 474


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +2

Query: 743  PPAPXXKXNSPXXXPXRPPPPTXXXXXXPLXXPXXPPHPPPXXPXP 880
            PP        P      PPPP       P   P  P  PP   P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPP-SAPPMPAGPPSAPPPP 1734


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = -1

Query: 894 GXXXXGXGXXGGGXGGXLGXXXGXXXXXXVGGGGRXGXXXGEXIXFXGAGG 742
           G    G G  GGG GG  G           G   R G   G      G GG
Sbjct: 130 GHAFAGGGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGG 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,611
Number of Sequences: 5004
Number of extensions: 10894
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)