Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P24
         (938 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0142 - 940421-940701,941262-941574                               33   0.43 
12_02_0045 + 12824766-12825417,12826608-12826753,12826825-128269...    29   5.3  
02_01_0006 - 42752-43816                                               29   5.3  
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419...    28   9.3  

>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +3

Query: 732 YGYPPNQGIPQEXTCDQKGXKRPEPVKRPXWLGGF--PKGXAPPDEHHXNP 878
           +GYPP+QG P +      G   P P   P   G +  P G  PP   +  P
Sbjct: 27  HGYPPHQGYPPQGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQP 77


>12_02_0045 +
           12824766-12825417,12826608-12826753,12826825-12826935,
           12827854-12828441
          Length = 498

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +3

Query: 777 DQKGXKRPEPVKRPXWLGGFPKGXAPPD-EHHXNPPPSQRWAKPDXTIKKPGVS 935
           D K   RP+P+       G P    P        PPP Q+W+    T+  PG S
Sbjct: 22  DPKPLLRPKPLLLLSTAMGSPARAQPSSWRSAGRPPPQQQWSCATCTLDNPGHS 75


>02_01_0006 - 42752-43816
          Length = 354

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 22/68 (32%), Positives = 28/68 (41%)
 Frame = +1

Query: 706 GISSPKGGNTVIHRIRGYRRKXHVTKRAXKGQNP*KGRVGWAVFPKAPPPRTSITKIXPQ 885
           G    +GG  V    R  + K   TKR  K  N   G VGW    + PPP   +     +
Sbjct: 3   GRKKKRGGVQVAVSCRSTQSKAEKTKRPTKAGNGSLGGVGWG---RLPPPLPLVFPKSRE 59

Query: 886 VKGGXNPT 909
           V  G NP+
Sbjct: 60  V--GQNPS 65


>02_03_0381 -
           18339290-18339994,18340083-18340103,18341925-18341982,
           18342084-18342220,18342480-18342650
          Length = 363

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 828 GGFPKGXAPPDEHHXNPPP 884
           G +  G  PP +HH  PPP
Sbjct: 143 GNYGSGYPPPHQHHMAPPP 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,137,579
Number of Sequences: 37544
Number of extensions: 367689
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)