Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_P23
(969 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.035
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 32 0.14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.56
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.98
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.0
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 27 4.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.9
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 9.2
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.035
Identities = 20/46 (43%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 959 HXGGGXP--GGXXGXPPXSXGGXGXXFXCXWGGXXXXGGEGGVXGG 828
H GGG GG G PP GG G F G GG GG GG
Sbjct: 185 HNGGGFGGFGGGSGGPPPGPGGFG-GFGGFGGEGHHHGGHGGFGGG 229
Score = 32.3 bits (70), Expect = 0.11
Identities = 21/45 (46%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 959 HXG-GGXPGGXXGXPPXSXGGXGXXFXCXWGGXXXXGGEGGVXGG 828
H G GG PGG G P GG G F GG GG GG GG
Sbjct: 223 HGGFGGGPGGFEGGPGGFGGGPG-GFGGGLGG--FGGGPGGFGGG 264
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 968 GXPHXGGGXPGGXXGXPPXSXGGXGXXFXCXWGGXXXXGGEGG 840
G P G PGG G P GG G G GG GG
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 27.9 bits (59), Expect = 2.3
Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Frame = -2
Query: 692 GFXGXFLGXFXXKIFFGGFXPKILGGXXFPPXGGGEXPXPPXXAGGXXFXXGXGGGXPKX 513
G G LG F + G F GGG PP G F G G
Sbjct: 162 GLGGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHG 221
Query: 512 XPXXPGGG-GXFFGG 471
GGG G F GG
Sbjct: 222 GHGGFGGGPGGFEGG 236
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.9 bits (69), Expect = 0.14
Identities = 20/54 (37%), Positives = 21/54 (38%)
Frame = -2
Query: 953 GGGXPGGXXGXPPXSXGGXGXXFXCXWGGXXXXGGEGGVXGGXXRXFFFXXRGG 792
G G GG G S GG G +GG G GG GG F RGG
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 29.1 bits (62), Expect = 0.98
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -2
Query: 950 GGXPGGXXGXPPXSXGGXGXXFXCXWGGXXXXGGEGGVXGGXXRXF 813
GG G G S GG G +GG G GG GG F
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGF 190
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.56
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = +1
Query: 475 PKKXPPPPGXXGXXFGXPPPXPXKKXXPPASXGG 576
P PPPPG G G PPP P P S GG
Sbjct: 761 PPPPPPPPGVAGA--GPPPPPP---PPPAVSAGG 789
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 481 KXPPPPGXXGXXFGXPPPXPXKKXXPPASXGGXGXSPPPXG 603
K PPPP P P P P GG PPP G
Sbjct: 730 KSPPPP-PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 868 PPQXXKXXXPXPPXEXGGSPXXPPGXPPP 954
PP P PP G + PP PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +1
Query: 472 PPKKXPPPPGXXGXXFGXPPPXPXKKXXPPASXGGXGXSPPP 597
PP P P P P PP G G PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 0.98
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = -2
Query: 953 GGGXPGGXXGXPPXSXGGXGXXFXCXWGGXXXXGGEGGVXGG 828
GGG G G + GG G G GG GG GG
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +1
Query: 478 KKXPPPPGXXGXXFGXPPPXPXKKXXPPASXGGXGXSPPP 597
KK PPPP PPP + PP G S PP
Sbjct: 308 KKRPPPP---------PPPSRRNRGKPPIGNGSSNSSLPP 338
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/55 (27%), Positives = 15/55 (27%)
Frame = -2
Query: 638 FXPKILGGXXFPPXGGGEXPXPPXXAGGXXFXXGXGGGXPKXXPXXPGGGGXFFG 474
F P G P G G P P G G P P G FG
Sbjct: 1057 FTPSNAGSTAAPMFGAGNTPNPSGSINNASQAFAFGSGEPSNPASNPPSTGFSFG 1111
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Frame = +1
Query: 475 PKKXPPPPGXXGXXFGXPPPXP----XKKXXPPASXG 573
P PPPPG PPP P +K PA G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 808 FXXGGVXPPWKXGGXF 761
F GGV PPW G F
Sbjct: 917 FANGGVQPPWSGNGNF 932
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.149 0.515
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,364
Number of Sequences: 5004
Number of extensions: 20548
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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