Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P18
         (1320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.010
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 32.3 bits (70), Expect = 0.010
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = +1

Query: 286 PPPPPPXPPXXPXXXPPP-PTXXPPPXXXPRAPXQXN 393
           P P P   P  P    PP P+  PPP   P AP   N
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQN 59


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 194  PPPPXPPP 217
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 197  PPPXPPPP 220
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 286  PPPPPPXP 309
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 289  PPPPPXPP 312
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 284  PPPPPPXXH 310
            PPPPPP  H
Sbjct: 1859 PPPPPPRNH 1867


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 640 PXNPXPPPPP 669
           P  P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 23.0 bits (47), Expect = 5.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 194 PPPPXPPPP 220
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.140    0.483 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,884
Number of Sequences: 438
Number of extensions: 11662
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45503877
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)