Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P16
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   9.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   9.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   9.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -3

Query: 693 KYQTVI*SGPVNWYFGYKFYKKYILHHRRRIAMLFCE 583
           +YQ      P   +   ++Y  Y LHH R      CE
Sbjct: 416 RYQPAFRCKPSQRFASGRYYSAYSLHHVRSSRESSCE 452


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 533 WNGRTVVFIIS*DFAGDSQNSIA 601
           WNG+T V I+  D    S N I+
Sbjct: 73  WNGKTFVTILRNDGVPSSLNVIS 95


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 499 SKRTQHSLNKLLEWE 543
           SK  +HS+N + EW+
Sbjct: 28  SKNLEHSMNVIHEWK 42


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 302 PKTVIFPAPRTTIGSGTNVT 243
           PK  IF A +T +G G   T
Sbjct: 553 PKYFIFDAEKTGLGKGPRTT 572


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,720
Number of Sequences: 438
Number of extensions: 4825
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)