Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P15
         (1000 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    33   0.42 
AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 26/98 (26%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
 Frame = +1

Query: 658 PSTLXXXPP--KXPPXXXTXTPX--TXQXXPXPXXLXXPHFPXPXKXPXPXXNKXTXXXX 825
           P+T    PP  K PP   T  P   T +  P P          P   P P          
Sbjct: 178 PTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPPA 237

Query: 826 XXPXXXXXPXXKKTXXXXPXPTEXXNPCXSPXPXPSGS 939
                      K T    P PT   NP  SP P P+ +
Sbjct: 238 PENTTAKVETTKPTKAAPPAPTPVPNPVPSPPPPPANT 275


>AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical
           protein Y47D7A.7 protein.
          Length = 121

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = +2

Query: 503 HPTGPKXPXPXP--PXXXXFPIXSXPPXXXXNKXXPPPSP 616
           +PT P  P P P  P    +P+    P        PPP+P
Sbjct: 26  YPTTPSYPTPPPSYPTPKKYPVAPTYPSTPSYSAQPPPAP 65


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 509 TGPKXPXPXPPXXXXFPIXSXPPXXXXNKXXPPPSP 616
           T P  P P PP     P  S  P        PPP P
Sbjct: 458 TPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPP 493



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +2

Query: 506 PTGPKXPXPXPPXXXXFPIXSXPPXXXXNKXXPPPSP 616
           PT PK P P PP     P  S P     +K  PPP P
Sbjct: 460 PTTPK-PAPPPPSRIPNPSPS-PQPAEVSKSPPPPPP 494


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 509 TGPKXPXPXPPXXXXFPIXSXPPXXXXNKXXPPPSP 616
           T P  P P PP     P  S  P        PPP P
Sbjct: 465 TPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPP 500



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +2

Query: 506 PTGPKXPXPXPPXXXXFPIXSXPPXXXXNKXXPPPSP 616
           PT PK P P PP     P  S P     +K  PPP P
Sbjct: 467 PTTPK-PAPPPPSRIPNPSPS-PQPAEVSKSPPPPPP 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,557,995
Number of Sequences: 27780
Number of extensions: 123281
Number of successful extensions: 258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2615559500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)