Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P14
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       30   2.7  
01_03_0005 + 11568545-11569119,11569179-11569191                       30   2.7  
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980...    28   8.1  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/57 (33%), Positives = 21/57 (36%)
 Frame = -2

Query: 486 GGXXXXXXPPXPKXGGAXXKKXXGGXXXXXXFFXGGXKGGGGXPXXXGKTPPXXXGG 316
           GG      PP    GGA  +   GG          G  GGGG P   G+ P    GG
Sbjct: 152 GGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGP---GRAPGGGGGG 205


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = -2

Query: 486 GGXXXXXXPPXPKXGGAXXKKXXGGXXXXXXFFXGGXKGGGGXPXXXG 343
           GG      PP P  GG       GG         GG  GGGG     G
Sbjct: 85  GGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGGGGGGWQQGGG 132


>11_04_0415 -
           17395988-17396161,17397349-17397444,17397489-17398026,
           17398106-17398422
          Length = 374

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 453 PKXGGAXXKKXXGGXXXXXXFFXGGXKG-GGGXPXXXGKTPPXXXGG 316
           P+ GG    +  GG      F  GG +G GGG P   G   P   GG
Sbjct: 8   PRGGGGGGPRGFGGGGPRG-FGGGGPRGFGGGGPRGFGGGGPRGFGG 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,801
Number of Sequences: 37544
Number of extensions: 362131
Number of successful extensions: 919
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)