Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_P13
(1055 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.16
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.36
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.83
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.16
Identities = 20/58 (34%), Positives = 20/58 (34%)
Frame = +1
Query: 772 PXPXPPXXXXGXPXSRPXXKXXXNPPXRXXXPXPXPPPPXXXPRXAXRGXXXPXNPPP 945
P P PP P P PP P PPPP P A G P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPV----PPPAPIMGGPPPPPP--PPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/73 (24%), Positives = 19/73 (26%)
Frame = +1
Query: 760 PPXXPXPXPPXXXXGXPXSRPXXKXXXNPPXRXXXPXPXPPPPXXXPRXAXRGXXXPXNP 939
PP P P P P PP PPPP P G P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Query: 940 PPXGXXAPPXXKT 978
P P +T
Sbjct: 796 APQAEPEPKIDET 808
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 844 PPXRXXXPXPXPPPPXXXPRXAXRGXXXPXNPPPXGXXAPP 966
PP P P P P P G P PPP A P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.36
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +2
Query: 761 PPXXHXPPRXXXXRGXPXAAPPRKXXXIPPXXAXXPXPXPXPXXTXPEXP 910
PP PP G P PP +P A P P P P P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP-PVPVPTAKAPPVP 1240
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.83
Identities = 17/68 (25%), Positives = 17/68 (25%)
Frame = +1
Query: 760 PPXXPXPXPPXXXXGXPXSRPXXKXXXNPPXRXXXPXPXPPPPXXXPRXAXRGXXXPXNP 939
PP P P P P S P P P P PP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 940 PPXGXXAP 963
PP P
Sbjct: 184 PPSAPSLP 191
Score = 27.1 bits (57), Expect = 4.4
Identities = 24/90 (26%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Frame = +1
Query: 760 PPXXPXPXP-PXXXXGXPXSRPXXKXXXNPPXRXXXPXPXPPPPXXXPRXAXRGXXXPXN 936
PP P P P P P PP + P PP P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP--PMPPKV 201
Query: 937 PPPXGXXAPPXXKTRQRXTRXHXXXXGHSP 1026
PPP A P T R + GH+P
Sbjct: 202 PPPPLSQA-PVANTSSRPS-SFAPPAGHAP 229
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 871 PXPPPPXXXPRXAXRGXXXPXNPPPXGXXAPP 966
P PP P R P PPP APP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPP 159
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 3.4
Identities = 20/66 (30%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Frame = +1
Query: 772 PXPXPPXXXXGXPXSRPXXKXXXNPPXRXXXPXPXPPPPXXXPRXAXRGXXXPXNPP-PX 948
P P PP P S P PP PP P P P PP P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSA----PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Query: 949 GXXAPP 966
APP
Sbjct: 472 AAPAPP 477
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/65 (26%), Positives = 18/65 (27%), Gaps = 3/65 (4%)
Frame = +1
Query: 760 PPXXPXPXPPXXXXGXPXS---RPXXKXXXNPPXRXXXPXPXPPPPXXXPRXAXRGXXXP 930
P P P P P + RP NP P PPP A
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKR 310
Query: 931 XNPPP 945
PPP
Sbjct: 311 PPPPP 315
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 760 PPXXPXPXPPXXXXGXPXSRP-XXKXXXNPPXRXXXPXPXPPPP 888
PP P PP G P + P PP P P PP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 816 PPXXEKXXXSPQXXQXTPPPPPXPXXXAP 902
PP + PQ TPPPPP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,589
Number of Sequences: 5004
Number of extensions: 23463
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 555217708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -