Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P11
         (1291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    30   4.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    29   5.4  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    29   5.4  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    29   5.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   5.4  

>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
 Frame = +1

Query: 34  PXPPXRX*XXRGXXGXPXXXXPPXPKGFXXXXXXXGTGG--GXPXXP 168
           P PP +    +   G P    PP PKG        GT G  G P  P
Sbjct: 145 PGPPPKPPCQKCPPGPPGPAGPPGPKGLPGPQGDAGTSGQDGVPGLP 191


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 24/78 (30%), Positives = 25/78 (32%)
 Frame = +1

Query: 34  PXPPXRX*XXRGXXGXPXXXXPPXPKGFXXXXXXXGTGGGXPXXPHXXXXNQKNPPHPXX 213
           P PP       G  G P    PP P  F       G GG  P  P         PP P  
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRF----GPPGMGGMPPPPPPGMRYPGGMPP-PPP 352

Query: 214 TKXPIXX*NXXXGPPPPP 267
            + P         PPPPP
Sbjct: 353 PRYPSA--GPGMYPPPPP 368


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 257  PPXLXPKPXXXXXTTXETPXHXTPPNXPXXNTXPN 361
            PP L P+P        ETP +  P N P   + P+
Sbjct: 997  PPPLPPRPKVKTTAVDETPQNLVPNNQPAQPSSPS 1031


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 257  PPXLXPKPXXXXXTTXETPXHXTPPNXPXXNTXPN 361
            PP L P+P        ETP +  P N P   + P+
Sbjct: 997  PPPLPPRPKVKTTAVDETPQNLVPNNQPAQPSSPS 1031


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 257  PPXLXPKPXXXXXTTXETPXHXTPPNXPXXNTXPN 361
            PP L P+P        ETP +  P N P   + P+
Sbjct: 997  PPPLPPRPKVKTTAVDETPQNLVPNNQPAQPSSPS 1031


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 24/78 (30%), Positives = 25/78 (32%)
 Frame = +1

Query: 34  PXPPXRX*XXRGXXGXPXXXXPPXPKGFXXXXXXXGTGGGXPXXPHXXXXNQKNPPHPXX 213
           P PP       G  G P    PP P  F       G GG  P  P         PP P  
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRF----GPPGMGGMPPPPPPGMRYPGGMPP-PPP 362

Query: 214 TKXPIXX*NXXXGPPPPP 267
            + P         PPPPP
Sbjct: 363 PRYPSA--GPGMYPPPPP 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,541,096
Number of Sequences: 27780
Number of extensions: 201727
Number of successful extensions: 523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3610322468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)