Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P09
         (1161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.40 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -3

Query: 85  PPXPXXGGXXPX*PXXG-XGVXPPPLPP 5
           PP P  GG  P  P  G  G  PPP PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 89  LTPXPXXXGXXXPLTXXRXGGXPPPPPP 6
           + P P       P      GG PPPPPP
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/46 (28%), Positives = 13/46 (28%)
 Frame = -1

Query: 1086 PPPXPXXXXXXPXXXXXXXXXPXXXXXXXPPXXPPXXXXPFXPXPP 949
            PPP P      P         P       PP  PP       P PP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.165    0.563 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,014,570
Number of Sequences: 5004
Number of extensions: 9148
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)