Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P08
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    30   0.40 
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    28   1.6  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    28   2.1  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   6.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   8.6  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 495 LLSILPQPKNGVTLTNKSFIPNILVKN 575
           L +I P P N ++ TN +FIP+  +K+
Sbjct: 436 LTTITPSPSNSISYTNNTFIPSSSIKS 462


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
 Frame = +3

Query: 642 TQSIINDYS-DESDSEELGNDFFSINKPVL----IAPEVLSVDSELVQNTN 779
           T +++ D S +E D +E+ ND+ S ++PV     I+P + S +S   +NT+
Sbjct: 29  TDTLVKDNSFNEQDDQEVDNDYKSNDEPVQSQDPISPNMASNESGNSENTS 79


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 189 FEDCDTESPAAVISTEKY--AASTSTLVHDTTEPCQNLFNLLPEPSHKKPLVVEEDDEFL 362
           FE+ D+E+   +I  +++  A + S L HD  EP       + + +  K    EE+D   
Sbjct: 55  FENSDSENEKDLIDADEFEEAETLSDLEHDE-EPQTFADEFIDDEA--KECEGEEEDSVF 111

Query: 363 HKKEKHIVKP 392
              E+H VKP
Sbjct: 112 DSDEEHEVKP 121


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
            SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 306  LPEPSHKKPLVVEEDDEFLHKKEKHIVKPKAKISVPSLQDFKDMEDSL 449
            +PE   K  L+ E++DE LH +++ +     + S     D  D EDS+
Sbjct: 947  IPEDEAKLKLLAEQEDEHLHPEKEGM---SVENSDDDYHDDLDYEDSI 991


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +3

Query: 381 IVKPKAKISVPSLQDFKDMEDSLPNNKNKIHSGGKKSGLLSILPQPKNGV 530
           +++PK + SV   +  KD++  LP+ +    +  KK+ +  +    K G+
Sbjct: 476 VMEPKLQPSVKEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVGI 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,241,611
Number of Sequences: 5004
Number of extensions: 62491
Number of successful extensions: 237
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)