Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P07
         (1157 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.10 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.10
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 864 AXGGXPSPXXAPAXPPXXPPPHXXXGRXPXXPXRXP 971
           A G  PSP  +P  P    PP+   G  P  P   P
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.8 bits (49), Expect = 2.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 964  GXPPXAPXQXPPPPXPP 1014
            G PP  P Q PPP  PP
Sbjct: 37   GSPPN-PSQGPPPGGPP 52


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 988  QXPPPPXPPP 1017
            Q PPPP PPP
Sbjct: 1353 QQPPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,921
Number of Sequences: 438
Number of extensions: 4062
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39283326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)