Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P04
         (943 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    52   2e-05
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    37   0.85 
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    34   4.6  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 24/45 (53%), Positives = 25/45 (55%)
 Frame = +2

Query: 722 PGKXPRAPXLFRPCRLPDTCPPFXLGEXWXXLIXPXFRFPVXVRS 856
           P + P    LFRPCRLPDTCPPF L E W  LI       V  RS
Sbjct: 49  PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRS 93



 Score = 39.1 bits (87), Expect = 0.16
 Identities = 19/32 (59%), Positives = 20/32 (62%)
 Frame = +3

Query: 621 FPIGXAPLTSXTKIXXQFKGGEXXXDXKXXRR 716
           F IG APLTS TKI  Q +GGE   D K  RR
Sbjct: 16  FSIGSAPLTSITKIDAQVRGGETRQDYKDTRR 47


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 36.7 bits (81), Expect = 0.85
 Identities = 19/39 (48%), Positives = 20/39 (51%)
 Frame = +3

Query: 600 KXPXGWXFPIGXAPLTSXTKIXXQFKGGEXXXDXKXXRR 716
           + P    F IG APLTS TK   Q  GGE   D K  RR
Sbjct: 45  RGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRR 83


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 34.3 bits (75), Expect = 4.6
 Identities = 17/32 (53%), Positives = 17/32 (53%)
 Frame = +3

Query: 621 FPIGXAPLTSXTKIXXQFKGGEXXXDXKXXRR 716
           F IG APLTS  K   Q  GGE   D K  RR
Sbjct: 84  FSIGSAPLTSIAKSDAQISGGETRQDYKDPRR 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,987,277
Number of Sequences: 1657284
Number of extensions: 5959606
Number of successful extensions: 8312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8311
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86549281324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)