Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_P03
(1068 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0904 + 20717005-20718087 34 0.22
09_04_0130 - 14905044-14905505,14905865-14905933,14906000-149061... 31 1.6
03_01_0092 - 731069-731434,731569-733080 31 1.6
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 31 2.1
11_06_0610 - 25449085-25453284 29 4.8
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 4.8
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 29 6.3
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 6.3
03_01_0515 - 3864796-3865425 29 8.3
>04_03_0904 + 20717005-20718087
Length = 360
Score = 33.9 bits (74), Expect = 0.22
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +1
Query: 883 PXXXTPTSPXXNPPKHXXQTPHXTPXNTPIXXHXNKSXXXKXPQXTPTKP 1032
P TPT P NPP P TP TP + P+ TPT P
Sbjct: 287 PTPYTPT-PKPNPPPTYKPQPKPTPTPTPYKPQPKPTPSPYTPKPTPTPP 335
>09_04_0130 - 14905044-14905505,14905865-14905933,14906000-14906104,
14906625-14906690,14907080-14907268,14907353-14907439,
14907597-14908118
Length = 499
Score = 31.1 bits (67), Expect = 1.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 979 HXNKSXXXKXPQXTPTKPXTXXGGGGXGGG 1068
H + PQ PT P GGGG GGG
Sbjct: 192 HQQQQHFQPHPQTAPTIPTQSFGGGGGGGG 221
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/70 (28%), Positives = 21/70 (30%)
Frame = +3
Query: 846 PXTTSHNNLXPPPXXXNPHIPXXXPPKTXPXNSPXNPXKHSHXTTXXQIPNXQXPXXNXH 1025
P H+ PPP PH P P P P T P P H
Sbjct: 250 PPPQHHHQQTPPPIQVQPH--HIMPMTPQPQLQPPQPQSKEANTVVRAAP----PPQEQH 303
Query: 1026 QTXHKXGGGG 1055
T GGGG
Sbjct: 304 DTAASGGGGG 313
>05_05_0155 + 22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = +3
Query: 858 SHNNLXPPPXXXNPHIPXXXPPKTXPXNSPXNPXKHSHXTTXXQIPNXQXPXXNXHQTXH 1037
SH PPP +PH PP P +P H H P+ P + H H
Sbjct: 21 SHIFAPPPPHLRHPH---HHPPHHHPHPPHHHPPHHPHPPHHPHPPHHPHPPHHPHPPHH 77
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 4.8
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 816 STXXQXPXKTPXT-TSHNNLXPPPXXXNPHIPXXXPPKTXPXNSPXNPXK 962
S + P P T TSH PPP +P P P + +SP +P K
Sbjct: 442 SPAYEEPPAAPSTPTSHG--PPPPEEESPEEPPEEPTPSPTPSSPESPAK 489
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.5 bits (63), Expect = 4.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +3
Query: 840 KTPXTTSHNNLXPPPXXXNPHIPXXXPPKTXPXNSP 947
K T + L PPP P P PP P N P
Sbjct: 414 KATETIQYTELPPPPPLPPPPPPPPPPPPPLPPNMP 449
>09_06_0107 + 20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 29.1 bits (62), Expect = 6.3
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +1
Query: 880 PPXXXTPTSPXXNPPKHXXQTPHXTPXNTPIXXHXNKSXXXKXPQXTPTKP 1032
PP TP SP PP P +P T N S P P P
Sbjct: 73 PPPPQTPPSPPPPPPPPPPPPPPLSPTPTTTSWTTNSSSISASPILPPPPP 123
>01_03_0117 + 12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/58 (25%), Positives = 18/58 (31%)
Frame = +1
Query: 880 PPXXXTPTSPXXNPPKHXXQTPHXTPXNTPIXXHXNKSXXXKXPQXTPTKPXTXXGGG 1053
PP +P PP H P P + K +P P T GGG
Sbjct: 262 PPSFPPQLAPTMPPPAHAPAETPAPPTTPPALPPATTAPSPKNSSSSPPPPCTGGGGG 319
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 8.3
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +3
Query: 834 PXKTPXTTSHNNLXPPPXXXNPHIPXXXPPKTXPXNSPXNPXKHS 968
P P + ++ PPP P P PP P P +P K S
Sbjct: 71 PPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSS 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,042,964
Number of Sequences: 37544
Number of extensions: 120364
Number of successful extensions: 3386
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3191
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3176197312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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