Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P03
         (1068 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL117202-4|CAB55095.3|  222|Caenorhabditis elegans Hypothetical ...    28   9.9  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 834 PXKTPXTTSHNNLXPPPXXXNPHIPXXXPPKTXPXNSPXNPXK 962
           P + P T    +  P      P  P   PP+T P   P NP +
Sbjct: 143 PPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPR 185


>AL117202-4|CAB55095.3|  222|Caenorhabditis elegans Hypothetical
           protein Y47D3A.5 protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 840 KTPXTTSHNNLXPPPXXXNPHIPXXXPPKTXPXNSPXNPXK 962
           + P T S N+   PP    PH P   P    P  +P  P K
Sbjct: 74  RLPRTPSRNSPLTPPTKTPPHTPTRTPTTESPV-APRTPGK 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,282,121
Number of Sequences: 27780
Number of extensions: 77243
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2856190974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)