Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_P02
         (1106 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.50 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.7  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    26   8.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 318  PSXXPPPQXXHXPXXPXXNPLXXPXXPPPPXP 413
            P+  PPP     P      P   P  PPPP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/56 (26%), Positives = 20/56 (35%)
 Frame = +2

Query: 905  TPKKXTPRPSSNPXHPXXXXPXNHNXPSXXEPANXLPXTXPXXXHXENPQTLQQPP 1072
            TPK+  P P+  P  P    P + N      P+  +            P T  QPP
Sbjct: 228  TPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPP 283


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 329 PSPXTPSXSXXPXXKPXXPPXXPPPP 406
           P    PS    P   P  PP  PPPP
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 924  PXXPXTPRTPXXXXPXTTTXPPRXNXQTNSPXPHPLXXTXKTXKHXN 1064
            P    TP  P    P + T PPR N   + P P+ +  T  +  + N
Sbjct: 421  PKQNPTPAAPGAF-PNSNTLPPRYNELGSLPSPNSVSFTEDSRPNVN 466


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +3

Query: 318 PSXXPPPQXXHXPXXPXXNPLXXPXXPPPPXP 413
           P   PPP   +    P  N       PPPP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.140    0.466 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,300
Number of Sequences: 5004
Number of extensions: 21205
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 585701508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)