Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_O24
(936 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce... 119 5e-28
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 75 2e-14
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 52 2e-07
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 27 2.9
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 26 6.6
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 8.8
>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 119 bits (287), Expect = 5e-28
Identities = 59/92 (64%), Positives = 69/92 (75%), Gaps = 4/92 (4%)
Frame = +2
Query: 212 MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQXNEEYNIFNGVLRAVDLCAAPGSWSQVLT 391
MG++SKDKRD YYRLAKE+GWRARSAFKLLQ NE++N+F G R VDLCAAPGSWSQVL+
Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60
Query: 392 KNLRQNAVNT----EDVKIVAVDLQGDGSITG 475
+ L +N + E IVAVDLQ I G
Sbjct: 61 RELLKNIDTSIAADEKPMIVAVDLQPMAPIDG 92
Score = 119 bits (287), Expect = 5e-28
Identities = 65/135 (48%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Frame = +3
Query: 459 MAALPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEYVQSQLLLA 638
MA + GV +Q DIT T + I+ F ADLVV DGAPDVTGLHD+DEY+Q+Q+LLA
Sbjct: 87 MAPIDGVCTLQLDITHPNTLSIILSHFGNEPADLVVSDGAPDVTGLHDLDEYIQAQILLA 146
Query: 639 ALNITTHVLKNGGTFVAXIFRGKDVXCCTHX*NSFLNL*QYPKPRSSRNSSIEALVFAKN 818
A N+ VLK GG FVA IFRG+DV KPRSSR SSIE+ V ++
Sbjct: 147 AFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVVCED 206
Query: 819 -TSPXKYLPNMVQXL 860
P + P++ + L
Sbjct: 207 FNPPSNFQPDLTKPL 221
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 74.5 bits (175), Expect = 2e-14
Identities = 36/82 (43%), Positives = 54/82 (65%)
Frame = +2
Query: 206 KNMGKTSKDKRDIYYRLAKEEGWRARSAFKLLQXNEEYNIFNGVLRAVDLCAAPGSWSQV 385
K+ KT+K + D +Y+LAKE+G+R+R+AFKL+Q N++Y+ +DLCAAPG W QV
Sbjct: 3 KSQKKTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQV 62
Query: 386 LTKNLRQNAVNTEDVKIVAVDL 451
+K + ++ IV VDL
Sbjct: 63 ASKTCKPGSL------IVGVDL 78
Score = 63.7 bits (148), Expect = 4e-11
Identities = 40/124 (32%), Positives = 57/124 (45%)
Frame = +3
Query: 468 LPGVKQIQGDITKQETANAIIEEFQGLKADLVVCDGAPDVTGLHDIDEYVQSQLLLAALN 647
+P DIT + + + + KAD+V+ DGAP+V D Y Q+QL+L ++
Sbjct: 84 IPNCHTFVEDITSDKCRSQLRGYLKTWKADVVLHDGAPNVGSAWLQDAYGQAQLVLMSMK 143
Query: 648 ITTHVLKNGGTFVAXIFRGKDVXCCTHX*NSFLNL*QYPKPRSSRNSSIEALVFAKNTSP 827
+ L GGTFV +FR +D N + KP SSRN S E V +
Sbjct: 144 LACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLFNKVEATKPPSSRNVSAEIFVVCRGYKA 203
Query: 828 XKYL 839
K L
Sbjct: 204 PKKL 207
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 51.6 bits (118), Expect = 2e-07
Identities = 25/77 (32%), Positives = 44/77 (57%)
Frame = +2
Query: 224 SKDKRDIYYRLAKEEGWRARSAFKLLQXNEEYNIFNGVLRAVDLCAAPGSWSQVLTKNLR 403
+K +D Y + +K + +R+R+A+KL++ N +Y N +D+ APGSWSQV K +
Sbjct: 12 AKRSKDFYRKKSKIDNFRSRAAYKLIELNSKYRFINKEDVVIDVGFAPGSWSQVAKKLVG 71
Query: 404 QNAVNTEDVKIVAVDLQ 454
K++ +D+Q
Sbjct: 72 NKG------KVIGIDIQ 82
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = +3
Query: 555 DLVVCDGAPDVTGLHDIDEYVQSQLLLAALNITTHVLKNGGTFVAXIFRGKDVXCCTHX* 734
D V+ D TG+ D + +L +AL++ LK+ G+F+ + G + +
Sbjct: 128 DAVISDMLHKATGIRIRDHALSMELCASALHVALTFLKSNGSFICKFYMGDEDADLQNLL 187
Query: 735 NSFLNL*QYPKPRSSRNSSIEALVFAKNTSP 827
S Q KP++S S EA P
Sbjct: 188 KSHFRFVQVMKPKASLKESREAYFVCLERKP 218
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 308 NEEYNIFNGVLRAVDLCAAPGSWSQVLTKNL 400
N+E+ +F VDL APG WS + +++
Sbjct: 67 NKEHQLFKPGQIVVDLGCAPGIWSTIAARHV 97
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 594 LHDIDEYVQSQLLLAALNITTHVLKNGGTF 683
LH I Y + + + A+ +T +L NGG +
Sbjct: 55 LHFIASYAEKETEVQAIEVTKWILSNGGVW 84
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 712 TSFPLNIXATNVPPFLSTWVVMFNAASNN*DWTYSSI 602
TS NI + PP S + V FNAA+ N + T S+
Sbjct: 337 TSNASNIAPDSAPPASSQFSVPFNAAAENINDTPDSV 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,460,416
Number of Sequences: 5004
Number of extensions: 67412
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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