Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O24
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   2.3  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    24   2.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   3.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.0  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 604 ISCKPVTSGAPSHTTKSA 551
           I+C+ VTS A +H  KSA
Sbjct: 13  IACQDVTSAAVNHQRKSA 30


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 604 ISCKPVTSGAPSHTTKSA 551
           I+C+ VTS A +H  KSA
Sbjct: 13  IACQDVTSAAVNHQRKSA 30


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 309 LXCKSLNALRARQPSSLASL*YISRLSLDVLPIF 208
           L  + + AL  R    LAS  +I  LSL + P+F
Sbjct: 2   LVARPMQALSIRHAVILASFVWIYALSLSLPPLF 35


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 332 GVLRAVDLCAAPGSWSQV 385
           GV+RAV  C A G++S +
Sbjct: 356 GVMRAVKRCNATGAFSWI 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,555
Number of Sequences: 438
Number of extensions: 4820
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)