Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O22
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    60   3e-10
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    28   2.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.9  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   8.8  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   8.8  

>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 19/167 (11%)
 Frame = +1

Query: 67  VRHARHKIICLQNDHKKVMQLIERGIAKVYEDLIDSPGIDSEEINSCLNGYPV-FKK-DE 240
           +R ARH+II L+NDH+++   I++ + KV+          ++E        P+ F   + 
Sbjct: 52  IRTARHEIITLRNDHRELEDQIKKVLEKVFSGFSKESLAANDETKLAQEADPLNFNAANY 111

Query: 241 TVND-----------PTFATISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFKDVSQIMR 387
            +ND             F  +  V   SPA+EAGL   DELV     + +N   +S++  
Sbjct: 112 NMNDIISRSKILGRVKPFCVVDSVAVESPAQEAGLCIGDELV-----HVQNVTSLSELPT 166

Query: 388 IVSHSINYGITVI-VRRENAD-----LTFELVPKPWAKPGLLGCQIQ 510
            +S+++N  + V+ +R  +AD     +  +L P  W  PGLLGC ++
Sbjct: 167 FISNNVNKTLDVLLIRGYSADGSTNLVELKLTPHKWQGPGLLGCHLR 213


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 142 IAKVYEDLIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATISFVDKGSPAEE 303
           + K  +D+ D+P +        +  +P+FKK +   D  F+  +F   G+P  E
Sbjct: 189 VLKNMDDIFDTPYVYESPAEPDMFSFPIFKKPDDEEDYQFSD-NFDAYGAPRSE 241


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +1

Query: 163 LIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATISF 276
           ++ +PG D + I +C+    +   +ET+ +  F T+ +
Sbjct: 666 IMQNPGNDWDMIRACIGSKEILVPEETIKNILFTTLEY 703


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 358 NFKDVSQIMRIVSHSINYGITVIVRRENADL 450
           NFK + + +   SH IN  +T ++ +ENA +
Sbjct: 26  NFKHILRHLEHESHVINSTLTTLISQENASM 56


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 275 KLIVAKVGSLTVSSFLKTG*PFKHEFISSLSIPGLSIKSS 156
           KL +AK  S+T+ S   +     H F   LS+PG  IKS+
Sbjct: 703 KLDLAKANSITLKSEPSSA-VSTHSFEVHLSMPGTQIKSA 741


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +1

Query: 94  CLQNDHKKVMQLIERGIAKV-YEDLIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATI 270
           C  +D  K +  + + + K    +   S  + +E   SCL  YP+   +E      F   
Sbjct: 316 CSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLYPLLPVEEVEGMKKFVQT 375

Query: 271 SFVDKGSPAEEAGLRAHDE 327
              D   P  +  +RA +E
Sbjct: 376 MLYDSIYPFMQRCVRAWEE 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,915
Number of Sequences: 5004
Number of extensions: 64342
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)