Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O21
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    28   1.5  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   3.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   4.7  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   6.2  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    26   8.2  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 312 FKHASYLLALTSRHYVTDNNRDVALTPNDHLIRSITILKNKRKRKSNSIT 163
           +  AS +L  T R   TD N +   T N  + ++ T+  N +  KS+S+T
Sbjct: 354 YPQASEILDAT-RFLKTDTNNEQKPTNNSTITKATTLSDNSQNDKSSSVT 402


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 244 DISIIIRNVMSRRQCQKIACMFKKKTFFVLVIF 342
           DI I+I+   + R+C  +A    KKT ++L +F
Sbjct: 5   DIEIVIKEDFTYRECSDVANDVFKKTQWLLYVF 37


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 291  LALTSRHYVTDNNRDVALTPNDHLIRSITILKNK 190
            L L    Y+T  N+D+  T N  L + +  LK++
Sbjct: 1005 LVLLGNQYLTSGNQDINNTSNGSLFKRLRYLKSR 1038


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 548 ISRCVPYFFF*YTHKCFVGHLK*XKN-KNXNIFSTSVPK-ESVPRAFQVTLDAELNKLLN 375
           I+ C+ + F    H+  VG +       N ++ +  +P  + VPRA   T DA L+ ++ 
Sbjct: 195 IAVCLAHSFTFPDHELLVGKIAEEVGFSNISLSTKLMPMIKYVPRATSATADAYLSPVVR 254

Query: 374 KYL 366
           +YL
Sbjct: 255 RYL 257


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 353 RYRKKITSTKNVFFLNMQAIFWH*RRDITLRIIIEMSLL 237
           R  +K+ S+ NV+F     +F      + L+++I++SLL
Sbjct: 44  RDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSLL 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,278
Number of Sequences: 5004
Number of extensions: 56098
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)