Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O21
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 413 EKPEEPTLLALMSRICFXFYFXIILNVPRSIYVCI 517
           ++PE    L  +  + F F   I L+V  +I VC+
Sbjct: 14  DQPENTFSLLSVLLVGFLFLILIFLSVAGNILVCV 48


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 117 YNNKNNYLHWINGRSHFL 64
           YN K++YLH I   + F+
Sbjct: 93  YNGKHSYLHTITSPNKFV 110


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -3

Query: 455 FSTSVPKESVPRAFQVTLDAELNKLLNKYL*ISGRYRKKITSTKNVFFLNMQAIF 291
           FS S       RA ++   A+L  L+ + L +S R  + ++  + V+FLNM ++F
Sbjct: 192 FSESFQILHAGRALRILRLAKLLSLV-RLLRLS-RLVRYVSQWEEVYFLNMASVF 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,561
Number of Sequences: 438
Number of extensions: 4185
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)