Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O20
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    31   0.18 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.31 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.8  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 796 GXXRGKGPRX-PEGXXGGXGSRXXEGXNRXGXGGXSRG 686
           G  + KG R  P G  G  G R   G +R G GG SRG
Sbjct: 123 GPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRG 160



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
 Frame = -2

Query: 802 PTGXXRGKGPRXPEGXXGGX--GSRXXEGXN-RXGXGGXSRG 686
           P G   G   R   G   G   GSR   G N R G GG SRG
Sbjct: 127 PKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRG 168


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = -3

Query: 885 KGHGXG*XGGWGTXPXXGGXGPXPXXGTXXGXXGXRAHGXPKGGXG 748
           +GH  G  GG+G     G  GP P  G   G  G    G   GG G
Sbjct: 183 RGHNGGGFGGFG----GGSGGPPPGPGGFGGFGGFGGEGHHHGGHG 224



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = -3

Query: 888 GKGHGXG*XGGWGTXPXXGGXGPXPXXGTXXG-XXGXRAHGXPKGGXG 748
           G+GH  G  GG+G  P     GP    G   G   G    G   GG G
Sbjct: 215 GEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
 Frame = +2

Query: 740 SXSPXPPFGXPWA--LXPXXPXXVPXXGXGPX-PPXXGXVPQPPXXPXPCP 883
           S  P  P G P A  L P  P   P     P  PP     P PP  P P P
Sbjct: 434 SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
 Frame = +2

Query: 746  SPXPPFGXPWALXPXXPXXVPXXGXGPXP-PXXGXVPQPPXXPXPCPXPXXXXLXPP 913
            S  PP   P    P  P   P  G  P P P  G  P PP    P P P      PP
Sbjct: 1156 SGAPPVPKPSVAAPPVP--APSSGIPPVPKPAAGVPPVPPPSEAP-PVPKPSVGVPP 1209


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 824 PXPPXXGXVPQPPXXPXPCPXPXXXXLXPP 913
           P PP    VP P   P P P P      PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,873
Number of Sequences: 5004
Number of extensions: 24789
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)