Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O18
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    41   3e-04

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 41/162 (25%), Positives = 49/162 (30%), Gaps = 1/162 (0%)
 Frame = -3

Query: 799 GIHGWXX*XFPGGXXX*NRGNFXSGXXXIGGPXGN*IFXGXXPKXGXQIXXNX-NXXXKX 623
           G+  W    F  G     R  F +    I  P G  IF       G  I  +        
Sbjct: 290 GLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAI 349

Query: 622 GXVFXFPXGGLXGVXXXNFFXXXXXXXTFXGGGXFXKVXXXGXXXXXXGGFXXXXPXFXX 443
           G +  F  GGL GV   N         T+     F  V   G      G +    P    
Sbjct: 350 GFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYYWS-PKMFG 408

Query: 442 XXLNFXKXKIQFFXXFXGXKKXFFPXNFXGLXGXPXXXSXXP 317
              N     IQF+  F G    F P +F GL G P      P
Sbjct: 409 LMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYP 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,308,968
Number of Sequences: 5004
Number of extensions: 9424
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)