Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP15_F_O16
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 38 0.002
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.51
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 30 0.51
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 1.6
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 4.8
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 26 6.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 6.3
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 26 8.4
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 367 QKIVGAVKSLEALEMVISEAVKITKWELTEEGELVANNGSHEAVLYRSI 513
Q+ A+ SL A M+ +I + LT EGE + NGSHEA +Y I
Sbjct: 37 QEAQSAILSLAAKNMIEFSRHEIEIYNLTAEGENICANGSHEAKVYNEI 85
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.51
Identities = 26/94 (27%), Positives = 47/94 (50%)
Frame = -1
Query: 545 ITSDCGTPLSGILLYNTASWLPLLATSSPSSVNSHFVILTASEITISRASKLFTAPTIF* 366
++S T S + +++S P ++S SS++SH ++ + +S + T
Sbjct: 372 VSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNST--- 428
Query: 365 CSSLNSSHNFKVSALSLFSRYFKILSFNSILSSS 264
SS +SSH+ S SL S+ S +S+L+SS
Sbjct: 429 -SSRSSSHSSSHSLSSLSSKPILTASSSSLLTSS 461
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 29.9 bits (64), Expect = 0.51
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +1
Query: 277 MELNERILKYLENSDKADTLKLCEEFNEEHQKIVGAVKSLEALEMVISEAVKITKWELTE 456
+E E KY +N + TL C E EH +E L+ V S+ + T WE E
Sbjct: 1124 VEHKEENKKY-DNVNIQKTLAKCAEEFAEHTNF----NKVELLDFVYSK-LSSTIWENRE 1177
Query: 457 EGELVANNGSHEAVLYRSIPDSGV 528
E +L+ +RS+ D GV
Sbjct: 1178 EHDLLKIVRDVRQTFFRSLEDMGV 1201
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 28.3 bits (60), Expect = 1.6
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +1
Query: 262 GEELRMELNERILKYLENSDKADTLKLCEEF-NEEHQKIVGAVKSLEALEMVISEAVKIT 438
G E+R+ + E L+YLE DT+K EF + Q +V E E +E VK
Sbjct: 171 GTEIRLFMKEDQLQYLEEKTIKDTVKKHSEFISYPIQLVVTREVEKEVPEEEETEEVKNE 230
Query: 439 KWELTEEGELVANNGSHEAVLYRSIPDSGVPQSEVMKMVPM 561
+ + + E V + + + + ++ E+ K P+
Sbjct: 231 EDDKAPKIEEVDDESEKKEKKTKKVKETTTETEELNKTKPI 271
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 4.8
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 202 NSESWSSVLRFYNLKKLKYSGEELRMELNERILKYLENSDKA 327
NS S+++ L YNLKK GE+LR + +R LK + DKA
Sbjct: 351 NSFSFNA-LNDYNLKK---GGEKLRKKAIKRALKDRGSQDKA 388
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 382 AVKSLEALEMVISEAVKITKWELTEEGELVANNGSHEAV---LYRSIPDSGVPQSEVMKM 552
A+ L L+++ +E+ W + N H A +YRS+ G+P S+++ M
Sbjct: 7 ALLLLNLLQIIAAESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILM 66
Query: 553 V 555
+
Sbjct: 67 I 67
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 6.3
Identities = 27/92 (29%), Positives = 45/92 (48%)
Frame = -1
Query: 542 TSDCGTPLSGILLYNTASWLPLLATSSPSSVNSHFVILTASEITISRASKLFTAPTIF*C 363
+S T LS I +T+S +TSSPSS++S +IS +S + ++PT
Sbjct: 585 SSPSSTSLS-ISSSSTSSTFSSASTSSPSSISS----------SISSSSTILSSPTPSTS 633
Query: 362 SSLNSSHNFKVSALSLFSRYFKILSFNSILSS 267
S + SS + + S+ S + +S LS+
Sbjct: 634 SLMISSSSIISGSSSILSSSISTIPISSSLST 665
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 334 LKLCEEFNEEHQKIVGAVKSLEAL 405
LK + F+E+HQ+++GA+ + L
Sbjct: 469 LKYIQSFHEKHQQLIGALSEVYGL 492
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 44 DKKSVPTNESDS*YKILVRMKKTRCF*RCFDVSLLVAASLEV 169
+K +VP ++ + + I V+ + CF + D+ L+V + LEV
Sbjct: 113 EKVTVPFDKHKNPFLIYVKKRFAECFDKNPDLCLIVYSKLEV 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,838
Number of Sequences: 5004
Number of extensions: 57146
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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