Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O16
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   1.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   1.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   1.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 202 NSESWSSVLRFYNLKKLKYSGEELRMELNERILKYLEN--SDKADT 333
           N E  +  L+F   K+ K S +++++  N+RI  Y  N   DK  T
Sbjct: 110 NKEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDKCST 155


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 441 FCNLNSFRNNHFKSFQTFYSTNY 373
           + N N++ NN+  ++   Y+ NY
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 441 FCNLNSFRNNHFKSFQTFYSTNY 373
           + N N++ NN+  ++   Y+ NY
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNY 113


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +1

Query: 331 TLKLCEEFNEEHQKIVGAVKSLEALEMVISEAV 429
           T++ C+E +   Q I+G    L+  ++ I +++
Sbjct: 250 TIRKCDESSPHDQVIIGGSNGLDTSKVHIIDSI 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,201
Number of Sequences: 438
Number of extensions: 3874
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)