Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O15
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.11c |||transcription factor TFIIA complex small subunit ...   106   5e-24
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   3.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.2  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   8.2  

>SPCC553.11c |||transcription factor TFIIA complex small subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 107

 Score =  106 bits (254), Expect = 5e-24
 Identities = 51/97 (52%), Positives = 71/97 (73%)
 Frame = +3

Query: 57  YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTFKAGK 236
           Y+LYR + I  +L ++LD+LI  G+I+P LA+KVL  FDKS+ +AL+ +V+SRLTFK G 
Sbjct: 5   YELYRRSRI--SLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFK-GH 61

Query: 237 LNTYRFCDNVWTFMLNDVEFREVQELAKVEKVKIVAC 347
           L+TYRFCD VWTF++ +  FR   E     K++IVAC
Sbjct: 62  LDTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVAC 98


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 57  YQLYRNTTIGNTLQESLDELIQYGQITPALAVKVLLQFDKSINQALSNRVKSRLTF 224
           + LY+     N + + L ++ QYG+ +  L    L  +DK I ++    +K+R  F
Sbjct: 224 FLLYKKPPSSNGVLKPLKDVFQYGRCSSLLVRSQLDCYDKKIPESGVFDLKTRAVF 279


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 407  IKPSKLISYRLSAVVNIFTITCYYFNFFHLGQFLYFSKFNIIQHKSPYII 258
            IK S +      AVVN  T T   + F HLG+  YFS  + I+  + + +
Sbjct: 3052 IKGSSIYDAVAQAVVN--THTSIVWEFKHLGKTSYFSCLHFIRFLNTFCL 3099


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 359 IFTITCYYFNFFHLGQFLYFSKFNIIQHKSPYIITKPVCVKFSCF 225
           I TI  Y  + FHL  F  F + N +     +I  KPV V    F
Sbjct: 344 INTIIDYGMSLFHLFLFAAFIRNNSLYTSFNFITEKPVIVGLLLF 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,465
Number of Sequences: 5004
Number of extensions: 46418
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)