Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O13
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.24 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.74 
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    29   0.74 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.98 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.98 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   5.2  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   6.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +2

Query: 668 PPPPXFFXXXXXXXPXPPPPPPXXXGGGGPPPP 766
           PPPP          P P PPP    GG  PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +2

Query: 710 PXPPPPPPXXXGGGGPPPP 766
           P PPPPPP   G G PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 33.5 bits (73), Expect = 0.045
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +1

Query: 667 PPPPXFFFXXXXKXPXP-PPPPPXXXGGGGXPPPP 768
           PPPP          P P P PPP    GG  PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 667 PPPPXFFFXXXXKXPXPPPPPPXXXGGGG 753
           PPPP          P PPPPPP     GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 709 PXPPPPPPXXXGGGGXPPPP 768
           P PPPPP     G G PPPP
Sbjct: 762 PPPPPPP--GVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 669 PPPLXFFXXXXXXXPXPPPPPXXXGGGGXPPPP 767
           PP +          P PPP P   G    PPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +1

Query: 667 PPPPXFFFXXXXKXPXPPPPPPXXXGGGGXPPPP 768
           PPPP          P PPPP     G     P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 710 PXPPPPPPXXXGGGGPPPP 766
           P PPPPPP       PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 709 PXPPPPPPXXXGGGGXPPPP 768
           P PPPPP         PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 667 PPPPXFFFXXXXKXPXPPPP 726
           PPPP   F    + P PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 667  PPPPXFFFXXXXKXPXPPPPPPXXXGGGGXPPPP 768
            PPPP          P PP  PP   G    PPPP
Sbjct: 1707 PPPPPM------SVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 765 GGGGPPPPXXXGGGGGGXGXF 703
           G   PPPP   GG G G G F
Sbjct: 72  GNAAPPPPGAEGGPGAGFGGF 92


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 709 PXPPPPPPXXXGGGGXPPPP 768
           P PPPPPP        P PP
Sbjct: 3   PAPPPPPPAPAPAAAAPAPP 22


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 715 PPPPPPXXXGGGGXPPPP 768
           PPPPPP     G  P PP
Sbjct: 338 PPPPPPRSNAAGSIPLPP 355



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 711 PXPPPPPXXXGGGGXPPPP 767
           P PPPPP     G  P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP 355



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
 Frame = +1

Query: 667 PPPPXFFFXXXXKXPX-----PPPPPPXXXGGGGXPPPP 768
           PPPP          P      PPPPPP      G  PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 716 PPPPPPXXXGGGGPP 760
           PPPPPP     G PP
Sbjct: 312 PPPPPPSRRNRGKPP 326



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 716 PPPPPPXXXGGGGPPP 763
           PPPPPP      G PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -1

Query: 767 GGGGXPPPPXXXGGGGGGXGXXXXXXKKXXGGGG 666
           G GG PP P   GG GG  G           GGG
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -1

Query: 767 GGGGXPPPPXXXGGGGGGXGXXXXXXKKXXGGGG 666
           GG G PPP     GG GG G          G GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG 228


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 710 PXPPPPPPXXXGGGG 754
           P PPPPPP     GG
Sbjct: 946 PPPPPPPPLVSAAGG 960


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 722 PPPPXXXGGGGPPP 763
           PPPP   G G PPP
Sbjct: 129 PPPPAGFGRGAPPP 142


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +1

Query: 40  ENPFKXILTFWQVWIVXGXVSTVXPWFGLFLGKTQFXGAFR 162
           EN    +   W+ W + G +ST   W    L K      FR
Sbjct: 59  ENTSNFVSRDWRDWFIMGVISTGFAWSAYSLVKKYIAPMFR 99


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 674 PPXFFXXXXXXXPXPPPPPP 733
           PP +        P PPPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPP 243


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 716  PPPPPPXXXGGGGPP 760
            PPPPPP      GPP
Sbjct: 1882 PPPPPPMALPKAGPP 1896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,553
Number of Sequences: 5004
Number of extensions: 32634
Number of successful extensions: 355
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)