Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O07
         (924 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.18 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   6.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   6.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +1

Query: 793 PXXPPPPPQXNXXXPPXPPPPXXPXPPXXXPPPKXPXXHP 912
           P    P PQ +    P  P    P  P   PPP  P   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 25.8 bits (54), Expect = 0.56
 Identities = 13/45 (28%), Positives = 14/45 (31%)
 Frame = +1

Query: 778 PPXXPPXXPPPPPQXNXXXPPXPPPPXXPXPPXXXPPPKXPXXHP 912
           P    P   P P Q         PP     PP   PP   P  +P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 0.97
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 566 SPXXPGXXXPPSPPPGGP 513
           SP  P    PP  PPG P
Sbjct: 38  SPPNPSQGPPPGGPPGAP 55



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +2

Query: 167 PXXPQKGGXPGPXXGXKXXGGXG 235
           P  PQ+G  P P  G    G  G
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 12/45 (26%), Positives = 12/45 (26%)
 Frame = +1

Query: 790 PPXXPPPPPQXNXXXPPXPPPPXXPXPPXXXPPPKXPXXHPXXXP 924
           P    P P       P  P     P P    PP   P   P   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 911 GWXXGXXGGGXXXGGXGXXGGGGXG 837
           G   G  GG    G     GGGG G
Sbjct: 29  GVVTGASGGSIVVGANNGGGGGGLG 53


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 814 PQXNXXXPPXPPPPXXPXPPXXXPPPKXPXXHP 912
           P+     PP P P   P       PP+ P   P
Sbjct: 145 PRFRYIGPPTPFPRFIPPNAYRFRPPQNPRFGP 177


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 814 PQXNXXXPPXPPPPXXPXPPXXXPPPKXPXXHP 912
           P+     PP P P   P       PP+ P   P
Sbjct: 145 PRFRYIGPPTPFPRFIPPNAYRFRPPQNPRFGP 177


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +1

Query: 814 PQXNXXXPPXPPPPXXPXPPXXXPPPKXPXXHP 912
           P+     PP P P   P       PP+ P   P
Sbjct: 383 PRFRYIGPPTPFPRFIPPNAYRFRPPQNPRFGP 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.146    0.499 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,600
Number of Sequences: 438
Number of extensions: 6881
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)