Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP15_F_O04
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.7  
06_03_0218 + 18219956-18220555                                         30   3.0  
01_01_0595 - 4430738-4430785,4430904-4432679                           30   3.0  
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474...    29   5.2  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.9  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.2  
03_04_0061 - 16949038-16950006                                         28   9.2  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 521 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 679
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 21/63 (33%), Positives = 26/63 (41%)
 Frame = -2

Query: 801 NGGFVHTAQLGANDLHRTEIXTA*XMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 622
           NGG     ++ A    +T        R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 621 LVS 613
             S
Sbjct: 137 RAS 139


>01_01_0595 - 4430738-4430785,4430904-4432679
          Length = 607

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = +2

Query: 680 DTCPPFSLREAWRFLIXHAVXISVRCRSFAPSWAVCTXPPFSPTAAPYPVTIVLSPPGKK 859
           DT PP +  +A    I  ++ + VR R  AP       PP +P      V+  +  P KK
Sbjct: 129 DTLPPAAADKA---AISPSIPVPVRKRVHAPQ------PPPAPAPEKAAVSPSIPVPAKK 179

Query: 860 RLIALAAALVQD 895
           R+ A AAA   D
Sbjct: 180 RVSATAAAAATD 191


>09_04_0424 +
           17444261-17444665,17445974-17446367,17447367-17447425,
           17447507-17447637,17447737-17447833,17447936-17448100
          Length = 416

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 764 FAPSWAVCTXPPFSPTAAPYPVTIVLSPP 850
           F P  AV   PP  P AAP PV + +  P
Sbjct: 67  FVPFHAVGPPPPPQPRAAPPPVAVAMGSP 95


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 353 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 508
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 302 NESAN---ARGEAVCVLGALPLPRSLTRCAR 385
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 603 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 719
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,145,477
Number of Sequences: 37544
Number of extensions: 539079
Number of successful extensions: 1804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1803
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)